RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 MT1XP80297 61 aa3.67□□□□□ -1.82
SMAD4-217ENST00000611848 MACF1Q9UPN3 7388 aaKnown RBP3.63□□□□□ -1.83
SMAD4-217ENST00000611848 KRTAP6-3Q3LI67 103 aa3.62□□□□□ -1.83
SMAD4-217ENST00000611848 PP632Q6XCG6 107 aa3.62□□□□□ -1.83
SMAD4-217ENST00000611848 TNP1P09430 55 aa3.59□□□□□ -1.83
SMAD4-217ENST00000611848 MT3P25713 68 aa3.57□□□□□ -1.84
SMAD4-217ENST00000611848 LCE1AQ5T7P2 110 aa3.55□□□□□ -1.84
SMAD4-217ENST00000611848 SYNE2Q8WXH0 6885 aaKnown RBP3.54□□□□□ -1.84
SMAD4-217ENST00000611848 KMT2DO14686 5537 aa3.53□□□□□ -1.84
SMAD4-217ENST00000611848 KRTAP5-9P26371 169 aa3.52□□□□□ -1.85
SMAD4-217ENST00000611848 KRTAP10-7P60409 375 aaPredicted RBP3.51□□□□□ -1.85
SMAD4-217ENST00000611848 KRTAP10-12P60413 245 aa3.51□□□□□ -1.85
SMAD4-217ENST00000611848 KRTAP8-1Q8IUC2 63 aa3.48□□□□□ -1.85
SMAD4-217ENST00000611848 MUC12Q9UKN1 5478 aa3.48□□□□□ -1.85
SMAD4-217ENST00000611848 LUZP6Q538Z0 58 aa3.44□□□□□ -1.86
SMAD4-217ENST00000611848 SPRR2FQ96RM1 72 aa3.44□□□□□ -1.86
SMAD4-217ENST00000611848 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.44□□□□□ -1.86
SMAD4-217ENST00000611848 LCE3AQ5TA76 89 aa3.41□□□□□ -1.86
SMAD4-217ENST00000611848 MDN1Q9NU22 5596 aa3.38□□□□□ -1.87
SMAD4-217ENST00000611848 SPRR2EP22531 72 aa3.35□□□□□ -1.87
SMAD4-217ENST00000611848 SPRR2BP35325 72 aa3.35□□□□□ -1.87
SMAD4-217ENST00000611848 SPRR2AP35326 72 aa3.35□□□□□ -1.87
SMAD4-217ENST00000611848 SPRR5A0A1B0GTR4 108 aa3.33□□□□□ -1.88
SMAD4-217ENST00000611848 NEBP20929 6669 aa3.31□□□□□ -1.88
SMAD4-217ENST00000611848 KRTAP19-7Q3SYF9 63 aa3.29□□□□□ -1.88
SMAD4-217ENST00000611848 KRTAP20-1Q3LI63 56 aa3.28□□□□□ -1.88
SMAD4-217ENST00000611848 KRTAP12-3P60328 96 aa3.27□□□□□ -1.89
SMAD4-217ENST00000611848 MT1EP04732 61 aa3.25□□□□□ -1.89
SMAD4-217ENST00000611848 KRTAP2-3P0C7H8 128 aa3.25□□□□□ -1.89
SMAD4-217ENST00000611848 KRTAP2-4Q9BYR9 128 aa3.25□□□□□ -1.89
SMAD4-217ENST00000611848 SPRR2DP22532 72 aa3.24□□□□□ -1.89
SMAD4-217ENST00000611848 KRTAP19-5Q3LI72 72 aa3.24□□□□□ -1.89
SMAD4-217ENST00000611848 KRTAP19-3Q7Z4W3 81 aa3.21□□□□□ -1.9
SMAD4-217ENST00000611848 KRTAP2-2Q9BYT5 123 aa3.2□□□□□ -1.9
SMAD4-217ENST00000611848 MT1GP13640 62 aa3.15□□□□□ -1.9
SMAD4-217ENST00000611848 KRTAP2-1Q9BYU5 128 aa3.15□□□□□ -1.9
SMAD4-217ENST00000611848 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
SMAD4-217ENST00000611848 KRTAP5-11Q6L8G4 156 aa3.13□□□□□ -1.91
SMAD4-217ENST00000611848 MT1LQ93083 61 aa3.13□□□□□ -1.91
SMAD4-217ENST00000611848 MT1MQ8N339 61 aa3.08□□□□□ -1.92
SMAD4-217ENST00000611848 LCE3CQ5T5A8 94 aa3.08□□□□□ -1.92
SMAD4-217ENST00000611848 DSTQ03001 7570 aaKnown RBP3.01□□□□□ -1.93
SMAD4-217ENST00000611848 KRTAP4-3Q9BYR4 195 aa2.98□□□□□ -1.93
SMAD4-217ENST00000611848 LCE1EQ5T753 118 aa2.97□□□□□ -1.93
SMAD4-217ENST00000611848 KRTAP5-4Q6L8H1 288 aa2.94□□□□□ -1.94
SMAD4-217ENST00000611848 KRTAP9-6A8MVA2 160 aa2.93□□□□□ -1.94
SMAD4-217ENST00000611848 KRTAP5-1Q6L8H4 278 aa2.88□□□□□ -1.95
SMAD4-217ENST00000611848 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
SMAD4-217ENST00000611848 MT4P47944 62 aa2.82□□□□□ -1.96
SMAD4-217ENST00000611848 KRTAP5-5Q701N2 237 aaPredicted RBP2.82□□□□□ -1.96
SMAD4-217ENST00000611848 INE1O15225 51 aa2.78□□□□□ -1.96
SMAD4-217ENST00000611848 HMCN1Q96RW7 5635 aa2.75□□□□□ -1.97
SMAD4-217ENST00000611848 KRTAP12-4P60329 112 aa2.72□□□□□ -1.97
SMAD4-217ENST00000611848 SYNE1Q8NF91 8797 aaKnown RBP2.7□□□□□ -1.98
SMAD4-217ENST00000611848 KRTAP20-2Q3LI61 65 aa2.68□□□□□ -1.98
SMAD4-217ENST00000611848 MT1AP04731 61 aa2.68□□□□□ -1.98
SMAD4-217ENST00000611848 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.98
SMAD4-217ENST00000611848 KRTAP6-1Q3LI64 71 aa2.64□□□□□ -1.99
SMAD4-217ENST00000611848 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
SMAD4-217ENST00000611848 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
SMAD4-217ENST00000611848 KRTAP5-10Q6L8G5 202 aa2.56□□□□□ -2
SMAD4-217ENST00000611848 GPR98Q8WXG9 6306 aa2.55□□□□□ -2
SMAD4-217ENST00000611848 KRTAP6-2Q3LI66 62 aa2.49□□□□□ -2.01
SMAD4-217ENST00000611848 KRTAP5-7Q6L8G8 165 aa2.44□□□□□ -2.02
SMAD4-217ENST00000611848 OBSCNQ5VST9 7968 aa2.41□□□□□ -2.02
SMAD4-217ENST00000611848 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
SMAD4-217ENST00000611848 LCE3DQ9BYE3 92 aa2.34□□□□□ -2.04
SMAD4-217ENST00000611848 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
SMAD4-217ENST00000611848 MUC5BQ9HC84 5762 aaPredicted RBP2.14□□□□□ -2.07
SMAD4-217ENST00000611848 PRM1P04553 51 aa2.09□□□□□ -2.07
SMAD4-217ENST00000611848 AHNAKQ09666 5890 aaKnown RBP2.06□□□□□ -2.08
SMAD4-217ENST00000611848 LCE1CQ5T751 118 aa2.05□□□□□ -2.08
SMAD4-217ENST00000611848 LCE1BQ5T7P3 118 aa2.05□□□□□ -2.08
SMAD4-217ENST00000611848 KRTAP21-2Q3LI59 83 aa1.73□□□□□ -2.13
SMAD4-217ENST00000611848 MUC19Q7Z5P9 8384 aa1.61□□□□□ -2.15
SMAD4-217ENST00000611848 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
SMAD4-217ENST00000611848 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
SMAD4-217ENST00000611848 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 241.5 ms