RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
SYNE1-240ENST00000610489 KRTAP10-12P60413 245 aa4.12□□□□□ -1.75
SYNE1-240ENST00000610489 KMT2DO14686 5537 aa4.1□□□□□ -1.75
SYNE1-240ENST00000610489 ROMO1P60602 79 aa4.09□□□□□ -1.75
SYNE1-240ENST00000610489 KRTAP6-3Q3LI67 103 aa4.08□□□□□ -1.76
SYNE1-240ENST00000610489 C10orf95Q9H7T3 257 aa4.07□□□□□ -1.76
SYNE1-240ENST00000610489 KRTAP2-2Q9BYT5 123 aa4.05□□□□□ -1.76
SYNE1-240ENST00000610489 KRTAP8-1Q8IUC2 63 aa4.04□□□□□ -1.76
SYNE1-240ENST00000610489 KRTAP5-9P26371 169 aa4.02□□□□□ -1.77
SYNE1-240ENST00000610489 LCE1FQ5T754 118 aa4.01□□□□□ -1.77
SYNE1-240ENST00000610489 TNP1P09430 55 aa4□□□□□ -1.77
SYNE1-240ENST00000610489 SPRR2FQ96RM1 72 aa3.97□□□□□ -1.77
SYNE1-240ENST00000610489 KRTAP25-1Q3LHN0 102 aa3.95□□□□□ -1.78
SYNE1-240ENST00000610489 KRTAP5-3Q6L8H2 238 aa3.94□□□□□ -1.78
SYNE1-240ENST00000610489 MUC12Q9UKN1 5478 aa3.93□□□□□ -1.78
SYNE1-240ENST00000610489 LCE3AQ5TA76 89 aa3.89□□□□□ -1.79
SYNE1-240ENST00000610489 MDN1Q9NU22 5596 aa3.88□□□□□ -1.79
SYNE1-240ENST00000610489 KRTAP19-7Q3SYF9 63 aa3.87□□□□□ -1.79
SYNE1-240ENST00000610489 NEBP20929 6669 aa3.86□□□□□ -1.79
SYNE1-240ENST00000610489 KRTAP19-5Q3LI72 72 aa3.84□□□□□ -1.79
SYNE1-240ENST00000610489 SPRR2EP22531 72 aa3.84□□□□□ -1.8
SYNE1-240ENST00000610489 SPRR2BP35325 72 aa3.84□□□□□ -1.8
SYNE1-240ENST00000610489 SPRR2AP35326 72 aa3.84□□□□□ -1.8
SYNE1-240ENST00000610489 MT1EP04732 61 aa3.82□□□□□ -1.8
SYNE1-240ENST00000610489 LUZP6Q538Z0 58 aa3.82□□□□□ -1.8
SYNE1-240ENST00000610489 PP632Q6XCG6 107 aa3.79□□□□□ -1.8
SYNE1-240ENST00000610489 KRTAP12-3P60328 96 aa3.75□□□□□ -1.81
SYNE1-240ENST00000610489 KRTAP19-3Q7Z4W3 81 aa3.74□□□□□ -1.81
SYNE1-240ENST00000610489 LCE3CQ5T5A8 94 aa3.73□□□□□ -1.81
SYNE1-240ENST00000610489 SPRR2DP22532 72 aa3.71□□□□□ -1.82
SYNE1-240ENST00000610489 MT1LQ93083 61 aa3.7□□□□□ -1.82
SYNE1-240ENST00000610489 MT1GP13640 62 aa3.67□□□□□ -1.82
SYNE1-240ENST00000610489 KRTAP20-1Q3LI63 56 aa3.66□□□□□ -1.82
SYNE1-240ENST00000610489 KRTAP2-3P0C7H8 128 aa3.63□□□□□ -1.83
SYNE1-240ENST00000610489 KRTAP2-4Q9BYR9 128 aa3.63□□□□□ -1.83
SYNE1-240ENST00000610489 MT1MQ8N339 61 aa3.62□□□□□ -1.83
SYNE1-240ENST00000610489 KRTAP2-1Q9BYU5 128 aa3.53□□□□□ -1.84
SYNE1-240ENST00000610489 DSTQ03001 7570 aaKnown RBP3.53□□□□□ -1.84
SYNE1-240ENST00000610489 KRTAP4-3Q9BYR4 195 aa3.52□□□□□ -1.85
SYNE1-240ENST00000610489 LCE3EQ5T5B0 92 aa3.42□□□□□ -1.86
SYNE1-240ENST00000610489 SPRR5A0A1B0GTR4 108 aa3.4□□□□□ -1.86
SYNE1-240ENST00000610489 KRTAP5-5Q701N2 237 aaPredicted RBP3.3□□□□□ -1.88
SYNE1-240ENST00000610489 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
SYNE1-240ENST00000610489 KRTAP9-6A8MVA2 160 aa3.28□□□□□ -1.88
SYNE1-240ENST00000610489 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
SYNE1-240ENST00000610489 MT4P47944 62 aa3.22□□□□□ -1.89
SYNE1-240ENST00000610489 HMCN1Q96RW7 5635 aa3.18□□□□□ -1.9
SYNE1-240ENST00000610489 MT1AP04731 61 aa3.15□□□□□ -1.9
SYNE1-240ENST00000610489 SYNE1Q8NF91 8797 aaKnown RBP3.14□□□□□ -1.91
SYNE1-240ENST00000610489 KRTAP12-4P60329 112 aa3.13□□□□□ -1.91
SYNE1-240ENST00000610489 KRTAP6-1Q3LI64 71 aa3.12□□□□□ -1.91
SYNE1-240ENST00000610489 KRTAP20-2Q3LI61 65 aa3.08□□□□□ -1.92
SYNE1-240ENST00000610489 KRTAP5-11Q6L8G4 156 aa3.02□□□□□ -1.93
SYNE1-240ENST00000610489 LCE3DQ9BYE3 92 aa2.98□□□□□ -1.93
SYNE1-240ENST00000610489 AHNAK2Q8IVF2 5795 aa2.96□□□□□ -1.94
SYNE1-240ENST00000610489 KRTAP5-2Q701N4 177 aa2.94□□□□□ -1.94
SYNE1-240ENST00000610489 KRTAP6-2Q3LI66 62 aa2.92□□□□□ -1.94
SYNE1-240ENST00000610489 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.92□□□□□ -1.94
SYNE1-240ENST00000610489 GPR98Q8WXG9 6306 aa2.89□□□□□ -1.95
SYNE1-240ENST00000610489 KRTAP5-10Q6L8G5 202 aa2.85□□□□□ -1.95
SYNE1-240ENST00000610489 INE1O15225 51 aa2.72□□□□□ -1.97
SYNE1-240ENST00000610489 KRTAP5-7Q6L8G8 165 aa2.7□□□□□ -1.98
SYNE1-240ENST00000610489 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
SYNE1-240ENST00000610489 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
SYNE1-240ENST00000610489 KRTAP5-1Q6L8H4 278 aa2.58□□□□□ -2
SYNE1-240ENST00000610489 MUC5ACP98088 5654 aa2.53□□□□□ -2
SYNE1-240ENST00000610489 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
SYNE1-240ENST00000610489 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
SYNE1-240ENST00000610489 LCE1BQ5T7P3 118 aa2.39□□□□□ -2.03
SYNE1-240ENST00000610489 LCE1CQ5T751 118 aa2.38□□□□□ -2.03
SYNE1-240ENST00000610489 AHNAKQ09666 5890 aaKnown RBP2.34□□□□□ -2.04
SYNE1-240ENST00000610489 PRM1P04553 51 aa2.13□□□□□ -2.07
SYNE1-240ENST00000610489 KRTAP21-2Q3LI59 83 aa2.05□□□□□ -2.08
SYNE1-240ENST00000610489 PHGR1C9JFL3 82 aa1.84□□□□□ -2.12
SYNE1-240ENST00000610489 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
SYNE1-240ENST00000610489 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.19
SYNE1-240ENST00000610489 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 90.3 ms