RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LCE3AQ5TA76 89 aa7.07□□□□□ -1.28
UPF1-212ENST00000601689 LCE5AQ5TCM9 118 aa7.06□□□□□ -1.28
UPF1-212ENST00000601689 PP632Q6XCG6 107 aa7.04□□□□□ -1.28
UPF1-212ENST00000601689 MT1GP13640 62 aa7□□□□□ -1.29
UPF1-212ENST00000601689 KRTAP25-1Q3LHN0 102 aa6.99□□□□□ -1.29
UPF1-212ENST00000601689 DSTQ03001 7570 aaKnown RBP6.92□□□□□ -1.3
UPF1-212ENST00000601689 MT1LQ93083 61 aa6.88□□□□□ -1.31
UPF1-212ENST00000601689 KRTAP12-3P60328 96 aa6.86□□□□□ -1.31
UPF1-212ENST00000601689 CDC42SE1Q9NRR8 79 aa6.82□□□□□ -1.32
UPF1-212ENST00000601689 MT1MQ8N339 61 aa6.81□□□□□ -1.32
UPF1-212ENST00000601689 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
UPF1-212ENST00000601689 ROMO1P60602 79 aa6.68□□□□□ -1.34
UPF1-212ENST00000601689 KRTAP19-4Q3LI73 84 aa6.6□□□□□ -1.35
UPF1-212ENST00000601689 KRTAP4-3Q9BYR4 195 aa6.57□□□□□ -1.36
UPF1-212ENST00000601689 LCE4AQ5TA78 99 aa6.54□□□□□ -1.36
UPF1-212ENST00000601689 KRTAP4-9Q9BYQ8 210 aa6.51□□□□□ -1.37
UPF1-212ENST00000601689 KRTAP15-1Q3LI76 137 aa6.49□□□□□ -1.37
UPF1-212ENST00000601689 KRTAP4-7Q9BYR0 210 aa6.49□□□□□ -1.37
UPF1-212ENST00000601689 LCE1DQ5T752 114 aa6.4□□□□□ -1.38
UPF1-212ENST00000601689 MT4P47944 62 aa6.39□□□□□ -1.39
UPF1-212ENST00000601689 KRTAP5-4Q6L8H1 288 aa6.35□□□□□ -1.39
UPF1-212ENST00000601689 LCE3CQ5T5A8 94 aa6.32□□□□□ -1.4
UPF1-212ENST00000601689 BRK1Q8WUW1 75 aa6.28□□□□□ -1.4
UPF1-212ENST00000601689 HMCN1Q96RW7 5635 aa6.21□□□□□ -1.41
UPF1-212ENST00000601689 KRTAP5-5Q701N2 237 aaPredicted RBP6.18□□□□□ -1.42
UPF1-212ENST00000601689 KRTAP4-6Q9BYQ5 205 aa6.16□□□□□ -1.42
UPF1-212ENST00000601689 LOC100996750A0A140TA64 210 aa6.15□□□□□ -1.42
UPF1-212ENST00000601689 KRTAP12-4P60329 112 aa6.14□□□□□ -1.43
UPF1-212ENST00000601689 GPR98Q8WXG9 6306 aa6.1□□□□□ -1.43
UPF1-212ENST00000601689 SPRR5A0A1B0GTR4 108 aa6.05□□□□□ -1.44
UPF1-212ENST00000601689 KRTAP20-2Q3LI61 65 aa6□□□□□ -1.45
UPF1-212ENST00000601689 SYNE1Q8NF91 8797 aaKnown RBP5.98□□□□□ -1.45
UPF1-212ENST00000601689 PMAIP1Q13794 54 aa5.94□□□□□ -1.46
UPF1-212ENST00000601689 AHNAK2Q8IVF2 5795 aa5.91□□□□□ -1.46
UPF1-212ENST00000601689 MT1AP04731 61 aa5.89□□□□□ -1.47
UPF1-212ENST00000601689 KRTAP9-6A8MVA2 160 aa5.81□□□□□ -1.48
UPF1-212ENST00000601689 KRTAP5-10Q6L8G5 202 aa5.81□□□□□ -1.48
UPF1-212ENST00000601689 KRTAP6-1Q3LI64 71 aa5.79□□□□□ -1.48
UPF1-212ENST00000601689 KRTAP5-3Q6L8H2 238 aa5.77□□□□□ -1.49
UPF1-212ENST00000601689 KRTAP9-4Q9BYQ2 154 aa5.68□□□□□ -1.5
UPF1-212ENST00000601689 PRO0628Q9UI54 55 aa5.61□□□□□ -1.51
UPF1-212ENST00000601689 KRTAP5-7Q6L8G8 165 aa5.58□□□□□ -1.52
UPF1-212ENST00000601689 KRTAP5-2Q701N4 177 aa5.58□□□□□ -1.52
UPF1-212ENST00000601689 PRAC1Q96KF2 57 aa5.54□□□□□ -1.52
UPF1-212ENST00000601689 KRTAP6-2Q3LI66 62 aa5.52□□□□□ -1.53
UPF1-212ENST00000601689 KRTAP4-11Q9BYQ6 195 aa5.45□□□□□ -1.54
UPF1-212ENST00000601689 MT3P25713 68 aa5.44□□□□□ -1.54
UPF1-212ENST00000601689 KTN1-AS1Q86SY8 53 aa5.34□□□□□ -1.55
UPF1-212ENST00000601689 OBSCNQ5VST9 7968 aa5.31□□□□□ -1.56
UPF1-212ENST00000601689 KRTAP5-8O75690 187 aa5.22□□□□□ -1.57
UPF1-212ENST00000601689 SVIPQ8NHG7 77 aa5.18□□□□□ -1.58
UPF1-212ENST00000601689 KRTAP9-9Q9BYP9 154 aa5.04□□□□□ -1.6
UPF1-212ENST00000601689 KRTAP5-1Q6L8H4 278 aa4.96□□□□□ -1.62
UPF1-212ENST00000601689 LCE1EQ5T753 118 aa4.92□□□□□ -1.62
UPF1-212ENST00000601689 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
UPF1-212ENST00000601689 MUC5BQ9HC84 5762 aaPredicted RBP4.82□□□□□ -1.64
UPF1-212ENST00000601689 MUC5ACP98088 5654 aa4.81□□□□□ -1.64
UPF1-212ENST00000601689 AHNAKQ09666 5890 aaKnown RBP4.76□□□□□ -1.65
UPF1-212ENST00000601689 LCE3DQ9BYE3 92 aa4.64□□□□□ -1.67
UPF1-212ENST00000601689 LCE1BQ5T7P3 118 aa4.62□□□□□ -1.67
UPF1-212ENST00000601689 LCE1CQ5T751 118 aa4.55□□□□□ -1.68
UPF1-212ENST00000601689 KRTAP4-2Q9BYR5 136 aa4.53□□□□□ -1.68
UPF1-212ENST00000601689 LCE3EQ5T5B0 92 aa4.41□□□□□ -1.7
UPF1-212ENST00000601689 KRTAP4-12Q9BQ66 201 aa4.37□□□□□ -1.71
UPF1-212ENST00000601689 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.14□□□□□ -1.75
UPF1-212ENST00000601689 KRTAP5-11Q6L8G4 156 aa4.09□□□□□ -1.75
UPF1-212ENST00000601689 LCE1FQ5T754 118 aa3.99□□□□□ -1.77
UPF1-212ENST00000601689 NDUFAF8A1L188 74 aa3.95□□□□□ -1.78
UPF1-212ENST00000601689 H3BS24 57 aa3.82□□□□□ -1.8
UPF1-212ENST00000601689 KRTAP21-2Q3LI59 83 aa3.79□□□□□ -1.8
UPF1-212ENST00000601689 PHGR1C9JFL3 82 aa3.51□□□□□ -1.85
UPF1-212ENST00000601689 KRTAP4-4Q9BYR3 166 aa3.45□□□□□ -1.86
UPF1-212ENST00000601689 PRM1P04553 51 aa3.39□□□□□ -1.87
UPF1-212ENST00000601689 A0A0A0MQY5 61 aa3.35□□□□□ -1.87
UPF1-212ENST00000601689 INE1O15225 51 aa3.29□□□□□ -1.88
UPF1-212ENST00000601689 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
UPF1-212ENST00000601689 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
UPF1-212ENST00000601689 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 119 ms