RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TNP1P09430 55 aa5.97□□□□□ -1.45
LSM4-206ENST00000600289 Q1T7F1 81 aa5.96□□□□□ -1.46
LSM4-206ENST00000600289 LCE5AQ5TCM9 118 aa5.94□□□□□ -1.46
LSM4-206ENST00000600289 KRTAP19-3Q7Z4W3 81 aa5.94□□□□□ -1.46
LSM4-206ENST00000600289 MIR22HGQ0VDD5 57 aa5.93□□□□□ -1.46
LSM4-206ENST00000600289 KRTAP19-5Q3LI72 72 aa5.93□□□□□ -1.46
LSM4-206ENST00000600289 KRTAP5-7Q6L8G8 165 aa5.93□□□□□ -1.46
LSM4-206ENST00000600289 LCE3AQ5TA76 89 aa5.88□□□□□ -1.47
LSM4-206ENST00000600289 PSPHP1O15172 72 aa5.86□□□□□ -1.47
LSM4-206ENST00000600289 PCP4P48539 62 aa5.84□□□□□ -1.47
LSM4-206ENST00000600289 MT1GP13640 62 aa5.83□□□□□ -1.48
LSM4-206ENST00000600289 MT4P47944 62 aa5.83□□□□□ -1.48
LSM4-206ENST00000600289 K7ERS5 55 aa5.8□□□□□ -1.48
LSM4-206ENST00000600289 RPS28P62857 69 aaKnown RBP5.78□□□□□ -1.48
LSM4-206ENST00000600289 MT1LQ93083 61 aa5.78□□□□□ -1.48
LSM4-206ENST00000600289 PP632Q6XCG6 107 aa5.77□□□□□ -1.49
LSM4-206ENST00000600289 LCE4AQ5TA78 99 aa5.75□□□□□ -1.49
LSM4-206ENST00000600289 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
LSM4-206ENST00000600289 SPRR5A0A1B0GTR4 108 aa5.72□□□□□ -1.49
LSM4-206ENST00000600289 MT1MQ8N339 61 aa5.72□□□□□ -1.49
LSM4-206ENST00000600289 KRTAP5-3Q6L8H2 238 aa5.71□□□□□ -1.5
LSM4-206ENST00000600289 A6NED7 52 aa5.7□□□□□ -1.5
LSM4-206ENST00000600289 KRTAP12-3P60328 96 aa5.66□□□□□ -1.5
LSM4-206ENST00000600289 KRTAP23-1A1A580 65 aa5.58□□□□□ -1.52
LSM4-206ENST00000600289 KRTAP5-4Q6L8H1 288 aa5.55□□□□□ -1.52
LSM4-206ENST00000600289 KRTAP4-3Q9BYR4 195 aa5.52□□□□□ -1.53
LSM4-206ENST00000600289 CDC42SE1Q9NRR8 79 aa5.51□□□□□ -1.53
LSM4-206ENST00000600289 KRTAP19-4Q3LI73 84 aa5.46□□□□□ -1.54
LSM4-206ENST00000600289 ROMO1P60602 79 aa5.44□□□□□ -1.54
LSM4-206ENST00000600289 KRTAP4-7Q9BYR0 210 aa5.44□□□□□ -1.54
LSM4-206ENST00000600289 KRTAP15-1Q3LI76 137 aa5.35□□□□□ -1.55
LSM4-206ENST00000600289 KRTAP20-2Q3LI61 65 aa5.28□□□□□ -1.56
LSM4-206ENST00000600289 KRTAP5-5Q701N2 237 aaPredicted RBP5.27□□□□□ -1.57
LSM4-206ENST00000600289 LCE3CQ5T5A8 94 aa5.24□□□□□ -1.57
LSM4-206ENST00000600289 AHNAKQ09666 5890 aaKnown RBP5.23□□□□□ -1.57
LSM4-206ENST00000600289 MUC5ACP98088 5654 aa5.19□□□□□ -1.58
LSM4-206ENST00000600289 KRTAP9-9Q9BYP9 154 aa5.18□□□□□ -1.58
LSM4-206ENST00000600289 KRTAP9-4Q9BYQ2 154 aa5.18□□□□□ -1.58
LSM4-206ENST00000600289 H3BS24 57 aa5.15□□□□□ -1.59
LSM4-206ENST00000600289 MUC5BQ9HC84 5762 aaPredicted RBP5.12□□□□□ -1.59
LSM4-206ENST00000600289 KRTAP12-4P60329 112 aa5.04□□□□□ -1.6
LSM4-206ENST00000600289 BRK1Q8WUW1 75 aa5.04□□□□□ -1.6
LSM4-206ENST00000600289 SYNE1Q8NF91 8797 aaKnown RBP5.03□□□□□ -1.6
LSM4-206ENST00000600289 KRTAP4-11Q9BYQ6 195 aa5.01□□□□□ -1.61
LSM4-206ENST00000600289 KRTAP4-2Q9BYR5 136 aa4.97□□□□□ -1.61
LSM4-206ENST00000600289 KRTAP5-8O75690 187 aa4.95□□□□□ -1.62
LSM4-206ENST00000600289 KRTAP9-6A8MVA2 160 aa4.93□□□□□ -1.62
LSM4-206ENST00000600289 MT1AP04731 61 aa4.93□□□□□ -1.62
LSM4-206ENST00000600289 KRTAP4-12Q9BQ66 201 aa4.87□□□□□ -1.63
LSM4-206ENST00000600289 KRTAP6-1Q3LI64 71 aa4.86□□□□□ -1.63
LSM4-206ENST00000600289 PRO0628Q9UI54 55 aa4.82□□□□□ -1.64
LSM4-206ENST00000600289 KRTAP5-2Q701N4 177 aa4.77□□□□□ -1.65
LSM4-206ENST00000600289 PMAIP1Q13794 54 aa4.74□□□□□ -1.65
LSM4-206ENST00000600289 OBSCNQ5VST9 7968 aa4.64□□□□□ -1.67
LSM4-206ENST00000600289 KRTAP6-2Q3LI66 62 aa4.61□□□□□ -1.67
LSM4-206ENST00000600289 PRAC1Q96KF2 57 aa4.5□□□□□ -1.69
LSM4-206ENST00000600289 MT3P25713 68 aa4.49□□□□□ -1.69
LSM4-206ENST00000600289 KRTAP5-1Q6L8H4 278 aa4.39□□□□□ -1.71
LSM4-206ENST00000600289 KTN1-AS1Q86SY8 53 aa4.35□□□□□ -1.71
LSM4-206ENST00000600289 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
LSM4-206ENST00000600289 A0A0A0MQY5 61 aa3.92□□□□□ -1.78
LSM4-206ENST00000600289 LUZP6Q538Z0 58 aa3.82□□□□□ -1.8
LSM4-206ENST00000600289 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
LSM4-206ENST00000600289 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
LSM4-206ENST00000600289 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
LSM4-206ENST00000600289 LCE3EQ5T5B0 92 aa3.61□□□□□ -1.83
LSM4-206ENST00000600289 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.6□□□□□ -1.83
LSM4-206ENST00000600289 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
LSM4-206ENST00000600289 PHGR1C9JFL3 82 aa3.54□□□□□ -1.84
LSM4-206ENST00000600289 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
LSM4-206ENST00000600289 LCE1FQ5T754 118 aa3.4□□□□□ -1.87
LSM4-206ENST00000600289 KRTAP21-2Q3LI59 83 aa3.22□□□□□ -1.89
LSM4-206ENST00000600289 INE1O15225 51 aa3.08□□□□□ -1.92
LSM4-206ENST00000600289 KRTAP4-4Q9BYR3 166 aa3.01□□□□□ -1.93
LSM4-206ENST00000600289 MUC19Q7Z5P9 8384 aa2.9□□□□□ -1.95
LSM4-206ENST00000600289 PRM1P04553 51 aa2.77□□□□□ -1.97
LSM4-206ENST00000600289 KRTAP21-1Q3LI58 79 aa2.68□□□□□ -1.98
LSM4-206ENST00000600289 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 158.3 ms