RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 KRTAP19-5Q3LI72 72 aa6.82□□□□□ -1.32
PNKP-213ENST00000599543 TNP1P09430 55 aa6.81□□□□□ -1.32
PNKP-213ENST00000599543 A6NED7 52 aa6.8□□□□□ -1.32
PNKP-213ENST00000599543 MT1GP13640 62 aa6.78□□□□□ -1.32
PNKP-213ENST00000599543 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
PNKP-213ENST00000599543 PP632Q6XCG6 107 aa6.76□□□□□ -1.33
PNKP-213ENST00000599543 K7ERS5 55 aa6.73□□□□□ -1.33
PNKP-213ENST00000599543 LCE1DQ5T752 114 aa6.68□□□□□ -1.34
PNKP-213ENST00000599543 MT1MQ8N339 61 aa6.66□□□□□ -1.34
PNKP-213ENST00000599543 MT1LQ93083 61 aa6.64□□□□□ -1.35
PNKP-213ENST00000599543 LCE4AQ5TA78 99 aa6.63□□□□□ -1.35
PNKP-213ENST00000599543 HMCN1Q96RW7 5635 aa6.6□□□□□ -1.35
PNKP-213ENST00000599543 MT4P47944 62 aa6.6□□□□□ -1.35
PNKP-213ENST00000599543 KRTAP25-1Q3LHN0 102 aa6.55□□□□□ -1.36
PNKP-213ENST00000599543 KRTAP4-3Q9BYR4 195 aa6.51□□□□□ -1.37
PNKP-213ENST00000599543 CDC42SE1Q9NRR8 79 aa6.5□□□□□ -1.37
PNKP-213ENST00000599543 KRTAP12-3P60328 96 aa6.46□□□□□ -1.38
PNKP-213ENST00000599543 KRTAP5-4Q6L8H1 288 aa6.45□□□□□ -1.38
PNKP-213ENST00000599543 AHNAK2Q8IVF2 5795 aa6.4□□□□□ -1.38
PNKP-213ENST00000599543 ROMO1P60602 79 aa6.37□□□□□ -1.39
PNKP-213ENST00000599543 KRTAP4-6Q9BYQ5 205 aa6.36□□□□□ -1.39
PNKP-213ENST00000599543 KRTAP4-7Q9BYR0 210 aa6.31□□□□□ -1.4
PNKP-213ENST00000599543 KRTAP5-10Q6L8G5 202 aa6.29□□□□□ -1.4
PNKP-213ENST00000599543 KRTAP23-1A1A580 65 aa6.23□□□□□ -1.41
PNKP-213ENST00000599543 BRK1Q8WUW1 75 aa6.18□□□□□ -1.42
PNKP-213ENST00000599543 KRTAP15-1Q3LI76 137 aa6.12□□□□□ -1.43
PNKP-213ENST00000599543 KRTAP5-5Q701N2 237 aaPredicted RBP6.12□□□□□ -1.43
PNKP-213ENST00000599543 KRTAP20-2Q3LI61 65 aa6.11□□□□□ -1.43
PNKP-213ENST00000599543 KRTAP5-3Q6L8H2 238 aa6.11□□□□□ -1.43
PNKP-213ENST00000599543 SPRR5A0A1B0GTR4 108 aa6.07□□□□□ -1.44
PNKP-213ENST00000599543 KRTAP5-7Q6L8G8 165 aa6.07□□□□□ -1.44
PNKP-213ENST00000599543 KRTAP12-4P60329 112 aa6.04□□□□□ -1.44
PNKP-213ENST00000599543 LOC100996750A0A140TA64 210 aa5.99□□□□□ -1.45
PNKP-213ENST00000599543 LCE3CQ5T5A8 94 aa5.97□□□□□ -1.45
PNKP-213ENST00000599543 SYNE1Q8NF91 8797 aaKnown RBP5.95□□□□□ -1.46
PNKP-213ENST00000599543 KRTAP19-4Q3LI73 84 aa5.94□□□□□ -1.46
PNKP-213ENST00000599543 H3BS24 57 aa5.83□□□□□ -1.48
PNKP-213ENST00000599543 PMAIP1Q13794 54 aa5.78□□□□□ -1.48
PNKP-213ENST00000599543 SVIPQ8NHG7 77 aa5.78□□□□□ -1.48
PNKP-213ENST00000599543 KRTAP9-6A8MVA2 160 aa5.7□□□□□ -1.5
PNKP-213ENST00000599543 MT1AP04731 61 aa5.65□□□□□ -1.5
PNKP-213ENST00000599543 KRTAP4-11Q9BYQ6 195 aa5.63□□□□□ -1.51
PNKP-213ENST00000599543 KRTAP6-1Q3LI64 71 aa5.62□□□□□ -1.51
PNKP-213ENST00000599543 PRAC1Q96KF2 57 aa5.62□□□□□ -1.51
PNKP-213ENST00000599543 KRTAP5-2Q701N4 177 aa5.61□□□□□ -1.51
PNKP-213ENST00000599543 PRO0628Q9UI54 55 aa5.55□□□□□ -1.52
PNKP-213ENST00000599543 KRTAP9-4Q9BYQ2 154 aa5.47□□□□□ -1.53
PNKP-213ENST00000599543 KRTAP5-8O75690 187 aa5.44□□□□□ -1.54
PNKP-213ENST00000599543 KRTAP6-2Q3LI66 62 aa5.43□□□□□ -1.54
PNKP-213ENST00000599543 OBSCNQ5VST9 7968 aa5.42□□□□□ -1.54
PNKP-213ENST00000599543 MUC5ACP98088 5654 aa5.32□□□□□ -1.56
PNKP-213ENST00000599543 MUC5BQ9HC84 5762 aaPredicted RBP5.31□□□□□ -1.56
PNKP-213ENST00000599543 AHNAKQ09666 5890 aaKnown RBP5.29□□□□□ -1.56
PNKP-213ENST00000599543 KTN1-AS1Q86SY8 53 aa5.26□□□□□ -1.57
PNKP-213ENST00000599543 KRTAP9-9Q9BYP9 154 aa5.22□□□□□ -1.57
PNKP-213ENST00000599543 MT3P25713 68 aa5.19□□□□□ -1.58
PNKP-213ENST00000599543 KRTAP5-1Q6L8H4 278 aa5.07□□□□□ -1.6
PNKP-213ENST00000599543 LCE1EQ5T753 118 aa4.8□□□□□ -1.64
PNKP-213ENST00000599543 A0A0A0MQY5 61 aa4.63□□□□□ -1.67
PNKP-213ENST00000599543 LUZP6Q538Z0 58 aa4.56□□□□□ -1.68
PNKP-213ENST00000599543 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
PNKP-213ENST00000599543 KRTAP4-2Q9BYR5 136 aa4.54□□□□□ -1.68
PNKP-213ENST00000599543 LCE1CQ5T751 118 aa4.46□□□□□ -1.7
PNKP-213ENST00000599543 LCE3DQ9BYE3 92 aa4.35□□□□□ -1.71
PNKP-213ENST00000599543 KRTAP4-12Q9BQ66 201 aa4.24□□□□□ -1.73
PNKP-213ENST00000599543 LCE3EQ5T5B0 92 aa4.14□□□□□ -1.75
PNKP-213ENST00000599543 KRTAP5-11Q6L8G4 156 aa4.06□□□□□ -1.76
PNKP-213ENST00000599543 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
PNKP-213ENST00000599543 NDUFAF8A1L188 74 aa4□□□□□ -1.77
PNKP-213ENST00000599543 LCE1FQ5T754 118 aa3.99□□□□□ -1.77
PNKP-213ENST00000599543 PHGR1C9JFL3 82 aa3.7□□□□□ -1.82
PNKP-213ENST00000599543 KRTAP21-2Q3LI59 83 aa3.7□□□□□ -1.82
PNKP-213ENST00000599543 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
PNKP-213ENST00000599543 MUC19Q7Z5P9 8384 aa3.34□□□□□ -1.87
PNKP-213ENST00000599543 INE1O15225 51 aa3.33□□□□□ -1.88
PNKP-213ENST00000599543 PRM1P04553 51 aa3.33□□□□□ -1.88
PNKP-213ENST00000599543 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
PNKP-213ENST00000599543 MUC16Q8WXI7 14507 aa2.36□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 94.3 ms