RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 K7ERS5 55 aa5.12□□□□□ -1.59
SHKBP1-217ENST00000598558 LCE3BQ5TA77 95 aa5.1□□□□□ -1.59
SHKBP1-217ENST00000598558 KRTAP2-2Q9BYT5 123 aa5.1□□□□□ -1.59
SHKBP1-217ENST00000598558 KRTAP2-1Q9BYU5 128 aa5.1□□□□□ -1.59
SHKBP1-217ENST00000598558 MT1LQ93083 61 aa5.09□□□□□ -1.59
SHKBP1-217ENST00000598558 KRTAP25-1Q3LHN0 102 aa5.07□□□□□ -1.6
SHKBP1-217ENST00000598558 MT1GP13640 62 aa5.05□□□□□ -1.6
SHKBP1-217ENST00000598558 BRK1Q8WUW1 75 aa5.04□□□□□ -1.6
SHKBP1-217ENST00000598558 KRTAP12-3P60328 96 aa5.01□□□□□ -1.61
SHKBP1-217ENST00000598558 MT1MQ8N339 61 aa5.01□□□□□ -1.61
SHKBP1-217ENST00000598558 CDC42SE1Q9NRR8 79 aa5.01□□□□□ -1.61
SHKBP1-217ENST00000598558 DSTQ03001 7570 aaKnown RBP4.95□□□□□ -1.62
SHKBP1-217ENST00000598558 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
SHKBP1-217ENST00000598558 PP632Q6XCG6 107 aa4.94□□□□□ -1.62
SHKBP1-217ENST00000598558 KRTAP4-7Q9BYR0 210 aa4.92□□□□□ -1.62
SHKBP1-217ENST00000598558 ROMO1P60602 79 aa4.91□□□□□ -1.62
SHKBP1-217ENST00000598558 KRTAP23-1A1A580 65 aa4.88□□□□□ -1.63
SHKBP1-217ENST00000598558 PMAIP1Q13794 54 aa4.82□□□□□ -1.64
SHKBP1-217ENST00000598558 GPR98Q8WXG9 6306 aa4.79□□□□□ -1.64
SHKBP1-217ENST00000598558 KRTAP15-1Q3LI76 137 aa4.76□□□□□ -1.65
SHKBP1-217ENST00000598558 KTN1-AS1Q86SY8 53 aa4.74□□□□□ -1.65
SHKBP1-217ENST00000598558 KRTAP4-9Q9BYQ8 210 aa4.74□□□□□ -1.65
SHKBP1-217ENST00000598558 KRTAP19-4Q3LI73 84 aa4.65□□□□□ -1.67
SHKBP1-217ENST00000598558 LCE3CQ5T5A8 94 aa4.65□□□□□ -1.67
SHKBP1-217ENST00000598558 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.67
SHKBP1-217ENST00000598558 LCE4AQ5TA78 99 aa4.64□□□□□ -1.67
SHKBP1-217ENST00000598558 LOC100996750A0A140TA64 210 aa4.63□□□□□ -1.67
SHKBP1-217ENST00000598558 LCE1DQ5T752 114 aa4.63□□□□□ -1.67
SHKBP1-217ENST00000598558 MT4P47944 62 aa4.6□□□□□ -1.67
SHKBP1-217ENST00000598558 KRTAP5-5Q701N2 237 aaPredicted RBP4.59□□□□□ -1.67
SHKBP1-217ENST00000598558 KRTAP4-6Q9BYQ5 205 aa4.55□□□□□ -1.68
SHKBP1-217ENST00000598558 HMCN1Q96RW7 5635 aa4.53□□□□□ -1.68
SHKBP1-217ENST00000598558 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
SHKBP1-217ENST00000598558 SYNE1Q8NF91 8797 aaKnown RBP4.42□□□□□ -1.7
SHKBP1-217ENST00000598558 PRAC1Q96KF2 57 aa4.4□□□□□ -1.71
SHKBP1-217ENST00000598558 KRTAP20-2Q3LI61 65 aa4.37□□□□□ -1.71
SHKBP1-217ENST00000598558 SPRR5A0A1B0GTR4 108 aa4.33□□□□□ -1.72
SHKBP1-217ENST00000598558 KRTAP12-4P60329 112 aa4.33□□□□□ -1.72
SHKBP1-217ENST00000598558 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
SHKBP1-217ENST00000598558 MT1AP04731 61 aa4.3□□□□□ -1.72
SHKBP1-217ENST00000598558 AHNAK2Q8IVF2 5795 aa4.29□□□□□ -1.72
SHKBP1-217ENST00000598558 KRTAP5-3Q6L8H2 238 aa4.26□□□□□ -1.73
SHKBP1-217ENST00000598558 KRTAP5-10Q6L8G5 202 aa4.2□□□□□ -1.74
SHKBP1-217ENST00000598558 KRTAP9-4Q9BYQ2 154 aa4.16□□□□□ -1.74
SHKBP1-217ENST00000598558 KRTAP5-2Q701N4 177 aa4.12□□□□□ -1.75
SHKBP1-217ENST00000598558 KRTAP6-2Q3LI66 62 aa4.06□□□□□ -1.76
SHKBP1-217ENST00000598558 KRTAP5-7Q6L8G8 165 aa4.01□□□□□ -1.77
SHKBP1-217ENST00000598558 H3BS24 57 aa3.93□□□□□ -1.78
SHKBP1-217ENST00000598558 KRTAP4-11Q9BYQ6 195 aa3.92□□□□□ -1.78
SHKBP1-217ENST00000598558 MT3P25713 68 aa3.91□□□□□ -1.78
SHKBP1-217ENST00000598558 KRTAP5-8O75690 187 aa3.81□□□□□ -1.8
SHKBP1-217ENST00000598558 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
SHKBP1-217ENST00000598558 NDUFAF8A1L188 74 aa3.72□□□□□ -1.81
SHKBP1-217ENST00000598558 KRTAP5-1Q6L8H4 278 aa3.67□□□□□ -1.82
SHKBP1-217ENST00000598558 AHNAKQ09666 5890 aaKnown RBP3.65□□□□□ -1.83
SHKBP1-217ENST00000598558 LUZP6Q538Z0 58 aa3.58□□□□□ -1.84
SHKBP1-217ENST00000598558 MUC5ACP98088 5654 aa3.57□□□□□ -1.84
SHKBP1-217ENST00000598558 LCE1EQ5T753 118 aa3.53□□□□□ -1.84
SHKBP1-217ENST00000598558 MUC5BQ9HC84 5762 aaPredicted RBP3.51□□□□□ -1.85
SHKBP1-217ENST00000598558 KRTAP9-9Q9BYP9 154 aa3.51□□□□□ -1.85
SHKBP1-217ENST00000598558 A0A0A0MQY5 61 aa3.43□□□□□ -1.86
SHKBP1-217ENST00000598558 KRTAP4-2Q9BYR5 136 aa3.39□□□□□ -1.87
SHKBP1-217ENST00000598558 LCE3DQ9BYE3 92 aa3.37□□□□□ -1.87
SHKBP1-217ENST00000598558 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
SHKBP1-217ENST00000598558 LCE1CQ5T751 118 aa3.29□□□□□ -1.88
SHKBP1-217ENST00000598558 LCE3EQ5T5B0 92 aa3.21□□□□□ -1.9
SHKBP1-217ENST00000598558 INE1O15225 51 aa3.15□□□□□ -1.91
SHKBP1-217ENST00000598558 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
SHKBP1-217ENST00000598558 KRTAP4-12Q9BQ66 201 aa3□□□□□ -1.93
SHKBP1-217ENST00000598558 KRTAP5-11Q6L8G4 156 aa2.95□□□□□ -1.94
SHKBP1-217ENST00000598558 KRTAP21-2Q3LI59 83 aa2.85□□□□□ -1.95
SHKBP1-217ENST00000598558 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
SHKBP1-217ENST00000598558 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
SHKBP1-217ENST00000598558 PHGR1C9JFL3 82 aa2.55□□□□□ -2
SHKBP1-217ENST00000598558 PRM1P04553 51 aa2.55□□□□□ -2
SHKBP1-217ENST00000598558 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.04
SHKBP1-217ENST00000598558 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
SHKBP1-217ENST00000598558 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 439.9 ms