RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MT1EP04732 61 aa5.66□□□□□ -1.5
UPF1-206ENST00000598471 SPRR2EP22531 72 aa5.6□□□□□ -1.51
UPF1-206ENST00000598471 SPRR2BP35325 72 aa5.6□□□□□ -1.51
UPF1-206ENST00000598471 SPRR2AP35326 72 aa5.6□□□□□ -1.51
UPF1-206ENST00000598471 KRTAP15-1Q3LI76 137 aa5.58□□□□□ -1.52
UPF1-206ENST00000598471 LCE1AQ5T7P2 110 aa5.58□□□□□ -1.52
UPF1-206ENST00000598471 MT1LQ93083 61 aa5.51□□□□□ -1.53
UPF1-206ENST00000598471 KRTAP19-3Q7Z4W3 81 aa5.5□□□□□ -1.53
UPF1-206ENST00000598471 KRTAP19-4Q3LI73 84 aa5.48□□□□□ -1.53
UPF1-206ENST00000598471 KRTAP20-1Q3LI63 56 aa5.47□□□□□ -1.53
UPF1-206ENST00000598471 MT1GP13640 62 aa5.44□□□□□ -1.54
UPF1-206ENST00000598471 KRTAP2-3P0C7H8 128 aa5.41□□□□□ -1.54
UPF1-206ENST00000598471 KRTAP2-4Q9BYR9 128 aa5.41□□□□□ -1.54
UPF1-206ENST00000598471 SPRR2DP22532 72 aa5.4□□□□□ -1.54
UPF1-206ENST00000598471 LCE5AQ5TCM9 118 aa5.4□□□□□ -1.54
UPF1-206ENST00000598471 LCE3CQ5T5A8 94 aa5.34□□□□□ -1.55
UPF1-206ENST00000598471 MT1MQ8N339 61 aa5.34□□□□□ -1.55
UPF1-206ENST00000598471 KRTAP2-2Q9BYT5 123 aa5.26□□□□□ -1.57
UPF1-206ENST00000598471 KRTAP2-1Q9BYU5 128 aa5.26□□□□□ -1.57
UPF1-206ENST00000598471 LCE3BQ5TA77 95 aa5.25□□□□□ -1.57
UPF1-206ENST00000598471 KRTAP4-7Q9BYR0 210 aa5.25□□□□□ -1.57
UPF1-206ENST00000598471 KRTAP4-3Q9BYR4 195 aa5.17□□□□□ -1.58
UPF1-206ENST00000598471 SPRR5A0A1B0GTR4 108 aa5.13□□□□□ -1.59
UPF1-206ENST00000598471 DSTQ03001 7570 aaKnown RBP5.07□□□□□ -1.6
UPF1-206ENST00000598471 GPR98Q8WXG9 6306 aa4.98□□□□□ -1.61
UPF1-206ENST00000598471 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
UPF1-206ENST00000598471 LUZP6Q538Z0 58 aa4.95□□□□□ -1.62
UPF1-206ENST00000598471 LOC100996750A0A140TA64 210 aa4.94□□□□□ -1.62
UPF1-206ENST00000598471 KRTAP4-9Q9BYQ8 210 aa4.87□□□□□ -1.63
UPF1-206ENST00000598471 KRTAP5-5Q701N2 237 aaPredicted RBP4.82□□□□□ -1.64
UPF1-206ENST00000598471 LCE4AQ5TA78 99 aa4.78□□□□□ -1.64
UPF1-206ENST00000598471 KRTAP5-4Q6L8H1 288 aa4.76□□□□□ -1.65
UPF1-206ENST00000598471 LCE1DQ5T752 114 aa4.75□□□□□ -1.65
UPF1-206ENST00000598471 MT4P47944 62 aa4.74□□□□□ -1.65
UPF1-206ENST00000598471 MT1AP04731 61 aa4.71□□□□□ -1.66
UPF1-206ENST00000598471 KRTAP4-6Q9BYQ5 205 aa4.66□□□□□ -1.66
UPF1-206ENST00000598471 KRTAP6-1Q3LI64 71 aa4.63□□□□□ -1.67
UPF1-206ENST00000598471 HMCN1Q96RW7 5635 aa4.62□□□□□ -1.67
UPF1-206ENST00000598471 NDUFAF8A1L188 74 aa4.61□□□□□ -1.67
UPF1-206ENST00000598471 KRTAP12-4P60329 112 aa4.6□□□□□ -1.67
UPF1-206ENST00000598471 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
UPF1-206ENST00000598471 KRTAP20-2Q3LI61 65 aa4.48□□□□□ -1.69
UPF1-206ENST00000598471 KRTAP9-4Q9BYQ2 154 aa4.48□□□□□ -1.69
UPF1-206ENST00000598471 AHNAK2Q8IVF2 5795 aa4.4□□□□□ -1.71
UPF1-206ENST00000598471 KRTAP5-3Q6L8H2 238 aa4.35□□□□□ -1.71
UPF1-206ENST00000598471 KRTAP6-2Q3LI66 62 aa4.31□□□□□ -1.72
UPF1-206ENST00000598471 MT3P25713 68 aa4.3□□□□□ -1.72
UPF1-206ENST00000598471 KRTAP5-10Q6L8G5 202 aa4.29□□□□□ -1.72
UPF1-206ENST00000598471 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
UPF1-206ENST00000598471 KRTAP5-7Q6L8G8 165 aa4.18□□□□□ -1.74
UPF1-206ENST00000598471 A0A0A0MQY5 61 aa4.07□□□□□ -1.76
UPF1-206ENST00000598471 KRTAP4-11Q9BYQ6 195 aa4.04□□□□□ -1.76
UPF1-206ENST00000598471 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
UPF1-206ENST00000598471 KRTAP5-8O75690 187 aa3.91□□□□□ -1.78
UPF1-206ENST00000598471 OBSCNQ5VST9 7968 aa3.88□□□□□ -1.79
UPF1-206ENST00000598471 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
UPF1-206ENST00000598471 INE1O15225 51 aa3.85□□□□□ -1.79
UPF1-206ENST00000598471 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
UPF1-206ENST00000598471 KRTAP5-1Q6L8H4 278 aa3.75□□□□□ -1.81
UPF1-206ENST00000598471 AHNAKQ09666 5890 aaKnown RBP3.72□□□□□ -1.81
UPF1-206ENST00000598471 MUC5ACP98088 5654 aa3.68□□□□□ -1.82
UPF1-206ENST00000598471 H3BS24 57 aa3.66□□□□□ -1.82
UPF1-206ENST00000598471 KRTAP9-9Q9BYP9 154 aa3.63□□□□□ -1.83
UPF1-206ENST00000598471 MUC5BQ9HC84 5762 aaPredicted RBP3.61□□□□□ -1.83
UPF1-206ENST00000598471 LCE1BQ5T7P3 118 aa3.53□□□□□ -1.84
UPF1-206ENST00000598471 LCE1CQ5T751 118 aa3.5□□□□□ -1.85
UPF1-206ENST00000598471 KRTAP4-2Q9BYR5 136 aa3.48□□□□□ -1.85
UPF1-206ENST00000598471 PRM1P04553 51 aa3.26□□□□□ -1.89
UPF1-206ENST00000598471 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.26□□□□□ -1.89
UPF1-206ENST00000598471 KRTAP5-11Q6L8G4 156 aa3.11□□□□□ -1.91
UPF1-206ENST00000598471 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
UPF1-206ENST00000598471 KRTAP21-2Q3LI59 83 aa3.03□□□□□ -1.92
UPF1-206ENST00000598471 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
UPF1-206ENST00000598471 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
UPF1-206ENST00000598471 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
UPF1-206ENST00000598471 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.03
UPF1-206ENST00000598471 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
UPF1-206ENST00000598471 MUC16Q8WXI7 14507 aa1.74□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 332.1 ms