RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 C10orf95Q9H7T3 257 aa4.21□□□□□ -1.74
LIG1-211ENST00000596457 AHNAK2Q8IVF2 5795 aa4.21□□□□□ -1.74
LIG1-211ENST00000596457 KRTAP4-7Q9BYR0 210 aa4.2□□□□□ -1.74
LIG1-211ENST00000596457 TNP1P09430 55 aa4.17□□□□□ -1.74
LIG1-211ENST00000596457 KRTAP5-10Q6L8G5 202 aa4.17□□□□□ -1.74
LIG1-211ENST00000596457 A6NED7 52 aa4.14□□□□□ -1.75
LIG1-211ENST00000596457 K7ERS5 55 aa4.14□□□□□ -1.75
LIG1-211ENST00000596457 RPS28P62857 69 aaKnown RBP4.13□□□□□ -1.75
LIG1-211ENST00000596457 KRTAP19-7Q3SYF9 63 aa4.13□□□□□ -1.75
LIG1-211ENST00000596457 LCE1DQ5T752 114 aa4.13□□□□□ -1.75
LIG1-211ENST00000596457 KRTAP5-7Q6L8G8 165 aa4.13□□□□□ -1.75
LIG1-211ENST00000596457 SPRR5A0A1B0GTR4 108 aa4.11□□□□□ -1.75
LIG1-211ENST00000596457 KRTAP19-5Q3LI72 72 aa4.11□□□□□ -1.75
LIG1-211ENST00000596457 MT1EP04732 61 aa4.1□□□□□ -1.75
LIG1-211ENST00000596457 LCE3AQ5TA76 89 aa4.1□□□□□ -1.75
LIG1-211ENST00000596457 HMCN1Q96RW7 5635 aa4.1□□□□□ -1.75
LIG1-211ENST00000596457 KRTAP4-2Q9BYR5 136 aa4.04□□□□□ -1.76
LIG1-211ENST00000596457 KRTAP19-3Q7Z4W3 81 aa4.03□□□□□ -1.76
LIG1-211ENST00000596457 LCE5AQ5TCM9 118 aa4□□□□□ -1.77
LIG1-211ENST00000596457 KRTAP25-1Q3LHN0 102 aa3.99□□□□□ -1.77
LIG1-211ENST00000596457 MT1GP13640 62 aa3.95□□□□□ -1.78
LIG1-211ENST00000596457 MT1LQ93083 61 aa3.95□□□□□ -1.78
LIG1-211ENST00000596457 KRTAP12-3P60328 96 aa3.93□□□□□ -1.78
LIG1-211ENST00000596457 PP632Q6XCG6 107 aa3.93□□□□□ -1.78
LIG1-211ENST00000596457 CDC42SE1Q9NRR8 79 aa3.93□□□□□ -1.78
LIG1-211ENST00000596457 MT4P47944 62 aa3.91□□□□□ -1.78
LIG1-211ENST00000596457 MT1MQ8N339 61 aa3.9□□□□□ -1.79
LIG1-211ENST00000596457 ROMO1P60602 79 aa3.87□□□□□ -1.79
LIG1-211ENST00000596457 KRTAP5-3Q6L8H2 238 aa3.85□□□□□ -1.79
LIG1-211ENST00000596457 KRTAP4-11Q9BYQ6 195 aa3.85□□□□□ -1.79
LIG1-211ENST00000596457 KRTAP4-3Q9BYR4 195 aa3.84□□□□□ -1.79
LIG1-211ENST00000596457 KRTAP23-1A1A580 65 aa3.81□□□□□ -1.8
LIG1-211ENST00000596457 LCE4AQ5TA78 99 aa3.78□□□□□ -1.8
LIG1-211ENST00000596457 AHNAKQ09666 5890 aaKnown RBP3.78□□□□□ -1.8
LIG1-211ENST00000596457 KRTAP15-1Q3LI76 137 aa3.73□□□□□ -1.81
LIG1-211ENST00000596457 BRK1Q8WUW1 75 aa3.73□□□□□ -1.81
LIG1-211ENST00000596457 H3BS24 57 aa3.7□□□□□ -1.82
LIG1-211ENST00000596457 KRTAP5-4Q6L8H1 288 aa3.67□□□□□ -1.82
LIG1-211ENST00000596457 KRTAP19-4Q3LI73 84 aa3.64□□□□□ -1.83
LIG1-211ENST00000596457 LCE3CQ5T5A8 94 aa3.63□□□□□ -1.83
LIG1-211ENST00000596457 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
LIG1-211ENST00000596457 MUC5BQ9HC84 5762 aaPredicted RBP3.62□□□□□ -1.83
LIG1-211ENST00000596457 A0A0A0MQY5 61 aa3.57□□□□□ -1.84
LIG1-211ENST00000596457 PMAIP1Q13794 54 aa3.51□□□□□ -1.85
LIG1-211ENST00000596457 KRTAP5-5Q701N2 237 aaPredicted RBP3.51□□□□□ -1.85
LIG1-211ENST00000596457 KRTAP12-4P60329 112 aa3.46□□□□□ -1.86
LIG1-211ENST00000596457 KRTAP20-2Q3LI61 65 aa3.45□□□□□ -1.86
LIG1-211ENST00000596457 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
LIG1-211ENST00000596457 MT1AP04731 61 aa3.36□□□□□ -1.87
LIG1-211ENST00000596457 PRAC1Q96KF2 57 aa3.36□□□□□ -1.87
LIG1-211ENST00000596457 KRTAP6-1Q3LI64 71 aa3.35□□□□□ -1.87
LIG1-211ENST00000596457 PRO0628Q9UI54 55 aa3.32□□□□□ -1.88
LIG1-211ENST00000596457 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
LIG1-211ENST00000596457 SYNE1Q8NF91 8797 aaKnown RBP3.3□□□□□ -1.88
LIG1-211ENST00000596457 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
LIG1-211ENST00000596457 KRTAP6-2Q3LI66 62 aa3.17□□□□□ -1.9
LIG1-211ENST00000596457 KTN1-AS1Q86SY8 53 aa3.16□□□□□ -1.9
LIG1-211ENST00000596457 MT3P25713 68 aa3.08□□□□□ -1.92
LIG1-211ENST00000596457 OBSCNQ5VST9 7968 aa3□□□□□ -1.93
LIG1-211ENST00000596457 KRTAP5-1Q6L8H4 278 aa2.87□□□□□ -1.95
LIG1-211ENST00000596457 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
LIG1-211ENST00000596457 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
LIG1-211ENST00000596457 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
LIG1-211ENST00000596457 LCE1BQ5T7P3 118 aa2.66□□□□□ -1.98
LIG1-211ENST00000596457 LCE3DQ9BYE3 92 aa2.66□□□□□ -1.98
LIG1-211ENST00000596457 NDUFAF8A1L188 74 aa2.62□□□□□ -1.99
LIG1-211ENST00000596457 KRTAP5-11Q6L8G4 156 aa2.6□□□□□ -1.99
LIG1-211ENST00000596457 LCE1CQ5T751 118 aa2.57□□□□□ -2
LIG1-211ENST00000596457 LCE3EQ5T5B0 92 aa2.53□□□□□ -2
LIG1-211ENST00000596457 PHGR1C9JFL3 82 aa2.47□□□□□ -2.01
LIG1-211ENST00000596457 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
LIG1-211ENST00000596457 LCE1FQ5T754 118 aa2.32□□□□□ -2.04
LIG1-211ENST00000596457 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
LIG1-211ENST00000596457 INE1O15225 51 aa2.13□□□□□ -2.07
LIG1-211ENST00000596457 PRM1P04553 51 aa2.01□□□□□ -2.09
LIG1-211ENST00000596457 MUC19Q7Z5P9 8384 aa1.9□□□□□ -2.11
LIG1-211ENST00000596457 KRTAP21-1Q3LI58 79 aa1.88□□□□□ -2.11
LIG1-211ENST00000596457 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 47.5 ms