RNA–Protein interactions for RNA: ENST00000596136.5

USE1-207, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 1 (best) BASIC

Gene USE1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-207ENST00000596136 KRTAP19-5Q3LI72 72 aa4.77□□□□□ -1.65
USE1-207ENST00000596136 LCE4AQ5TA78 99 aa4.77□□□□□ -1.65
USE1-207ENST00000596136 C10orf95Q9H7T3 257 aa4.75□□□□□ -1.65
USE1-207ENST00000596136 MT1GP13640 62 aa4.72□□□□□ -1.65
USE1-207ENST00000596136 TNP1P09430 55 aa4.71□□□□□ -1.66
USE1-207ENST00000596136 UQCR11O14957 56 aa4.67□□□□□ -1.66
USE1-207ENST00000596136 LCE3AQ5TA76 89 aa4.67□□□□□ -1.66
USE1-207ENST00000596136 PP632Q6XCG6 107 aa4.65□□□□□ -1.67
USE1-207ENST00000596136 MT1LQ93083 61 aa4.65□□□□□ -1.67
USE1-207ENST00000596136 MT1MQ8N339 61 aa4.63□□□□□ -1.67
USE1-207ENST00000596136 MIR22HGQ0VDD5 57 aa4.55□□□□□ -1.68
USE1-207ENST00000596136 V9GYY9 64 aa4.52□□□□□ -1.69
USE1-207ENST00000596136 KRTAP12-3P60328 96 aa4.51□□□□□ -1.69
USE1-207ENST00000596136 Q1T7F1 81 aa4.5□□□□□ -1.69
USE1-207ENST00000596136 KRTAP4-3Q9BYR4 195 aa4.49□□□□□ -1.69
USE1-207ENST00000596136 KRTAP25-1Q3LHN0 102 aa4.48□□□□□ -1.69
USE1-207ENST00000596136 PSPHP1O15172 72 aa4.46□□□□□ -1.7
USE1-207ENST00000596136 K7ERS5 55 aa4.44□□□□□ -1.7
USE1-207ENST00000596136 KRTAP5-4Q6L8H1 288 aa4.43□□□□□ -1.7
USE1-207ENST00000596136 HMCN1Q96RW7 5635 aa4.43□□□□□ -1.7
USE1-207ENST00000596136 GPR98Q8WXG9 6306 aa4.42□□□□□ -1.7
USE1-207ENST00000596136 MT4P47944 62 aa4.37□□□□□ -1.71
USE1-207ENST00000596136 KRTAP23-1A1A580 65 aa4.36□□□□□ -1.71
USE1-207ENST00000596136 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
USE1-207ENST00000596136 A6NED7 52 aa4.3□□□□□ -1.72
USE1-207ENST00000596136 RPS28P62857 69 aaKnown RBP4.3□□□□□ -1.72
USE1-207ENST00000596136 KRTAP5-5Q701N2 237 aaPredicted RBP4.27□□□□□ -1.73
USE1-207ENST00000596136 AHNAK2Q8IVF2 5795 aa4.25□□□□□ -1.73
USE1-207ENST00000596136 KRTAP15-1Q3LI76 137 aa4.23□□□□□ -1.73
USE1-207ENST00000596136 CDC42SE1Q9NRR8 79 aa4.21□□□□□ -1.74
USE1-207ENST00000596136 PCP4P48539 62 aa4.18□□□□□ -1.74
USE1-207ENST00000596136 ROMO1P60602 79 aa4.17□□□□□ -1.74
USE1-207ENST00000596136 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
USE1-207ENST00000596136 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
USE1-207ENST00000596136 KRTAP20-2Q3LI61 65 aa4.15□□□□□ -1.75
USE1-207ENST00000596136 KRTAP5-10Q6L8G5 202 aa4.14□□□□□ -1.75
USE1-207ENST00000596136 SYNE1Q8NF91 8797 aaKnown RBP4.13□□□□□ -1.75
USE1-207ENST00000596136 KRTAP12-4P60329 112 aa4.11□□□□□ -1.75
USE1-207ENST00000596136 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
USE1-207ENST00000596136 MT1AP04731 61 aa3.97□□□□□ -1.77
USE1-207ENST00000596136 KRTAP9-6A8MVA2 160 aa3.94□□□□□ -1.78
USE1-207ENST00000596136 KRTAP6-1Q3LI64 71 aa3.93□□□□□ -1.78
USE1-207ENST00000596136 KRTAP5-2Q701N4 177 aa3.89□□□□□ -1.79
USE1-207ENST00000596136 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.78□□□□□ -1.8
USE1-207ENST00000596136 H3BS24 57 aa3.74□□□□□ -1.81
USE1-207ENST00000596136 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
USE1-207ENST00000596136 BRK1Q8WUW1 75 aa3.68□□□□□ -1.82
USE1-207ENST00000596136 OBSCNQ5VST9 7968 aa3.67□□□□□ -1.82
USE1-207ENST00000596136 KRTAP5-8O75690 187 aa3.66□□□□□ -1.82
USE1-207ENST00000596136 MT3P25713 68 aa3.63□□□□□ -1.83
USE1-207ENST00000596136 SVIPQ8NHG7 77 aa3.53□□□□□ -1.84
USE1-207ENST00000596136 MUC5BQ9HC84 5762 aaPredicted RBP3.52□□□□□ -1.85
USE1-207ENST00000596136 AHNAKQ09666 5890 aaKnown RBP3.49□□□□□ -1.85
USE1-207ENST00000596136 PMAIP1Q13794 54 aa3.48□□□□□ -1.85
USE1-207ENST00000596136 KRTAP5-11Q6L8G4 156 aa3.47□□□□□ -1.85
USE1-207ENST00000596136 KRTAP5-1Q6L8H4 278 aa3.47□□□□□ -1.85
USE1-207ENST00000596136 MUC5ACP98088 5654 aa3.45□□□□□ -1.86
USE1-207ENST00000596136 LCE1EQ5T753 118 aa3.35□□□□□ -1.87
USE1-207ENST00000596136 PRAC1Q96KF2 57 aa3.35□□□□□ -1.87
USE1-207ENST00000596136 PRO0628Q9UI54 55 aa3.23□□□□□ -1.89
USE1-207ENST00000596136 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
USE1-207ENST00000596136 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
USE1-207ENST00000596136 LCE1BQ5T7P3 118 aa3.1□□□□□ -1.91
USE1-207ENST00000596136 KTN1-AS1Q86SY8 53 aa3.09□□□□□ -1.91
USE1-207ENST00000596136 LCE3DQ9BYE3 92 aa3□□□□□ -1.93
USE1-207ENST00000596136 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
USE1-207ENST00000596136 LUZP6Q538Z0 58 aa2.82□□□□□ -1.96
USE1-207ENST00000596136 LCE1FQ5T754 118 aa2.74□□□□□ -1.97
USE1-207ENST00000596136 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
USE1-207ENST00000596136 A0A0A0MQY5 61 aa2.54□□□□□ -2
USE1-207ENST00000596136 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
USE1-207ENST00000596136 MUC19Q7Z5P9 8384 aa2.25□□□□□ -2.05
USE1-207ENST00000596136 NDUFAF8A1L188 74 aa2.23□□□□□ -2.05
USE1-207ENST00000596136 PRM1P04553 51 aa2.12□□□□□ -2.07
USE1-207ENST00000596136 INE1O15225 51 aa1.82□□□□□ -2.12
USE1-207ENST00000596136 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
USE1-207ENST00000596136 MUC16Q8WXI7 14507 aa1.59□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 33.8 ms