RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
LIG1-209ENST00000596104 COA5Q86WW8 74 aa3.32□□□□□ -1.88
LIG1-209ENST00000596104 TNP1P09430 55 aa3.28□□□□□ -1.88
LIG1-209ENST00000596104 KRTAP12-4P60329 112 aa3.25□□□□□ -1.89
LIG1-209ENST00000596104 KRTAP12-3P60328 96 aa3.24□□□□□ -1.89
LIG1-209ENST00000596104 SERP2Q8N6R1 65 aa3.24□□□□□ -1.89
LIG1-209ENST00000596104 SMIM26A0A096LP01 95 aa3.22□□□□□ -1.89
LIG1-209ENST00000596104 A8MU10 97 aa3.22□□□□□ -1.89
LIG1-209ENST00000596104 SYNE1Q8NF91 8797 aaKnown RBP3.22□□□□□ -1.89
LIG1-209ENST00000596104 LOC100996750A0A140TA64 210 aa3.18□□□□□ -1.9
LIG1-209ENST00000596104 COX7CP15954 63 aa3.16□□□□□ -1.9
LIG1-209ENST00000596104 KRTAP4-11Q9BYQ6 195 aa3.14□□□□□ -1.91
LIG1-209ENST00000596104 A0A1B0GU69 56 aa3.13□□□□□ -1.91
LIG1-209ENST00000596104 SVIPQ8NHG7 77 aa3.13□□□□□ -1.91
LIG1-209ENST00000596104 ANAPC13Q9BS18 74 aa3.11□□□□□ -1.91
LIG1-209ENST00000596104 H7BZZ5 65 aa3.09□□□□□ -1.91
LIG1-209ENST00000596104 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
LIG1-209ENST00000596104 KRTAP5-8O75690 187 aa3.05□□□□□ -1.92
LIG1-209ENST00000596104 AHNAKQ09666 5890 aaKnown RBP3.04□□□□□ -1.92
LIG1-209ENST00000596104 MUC5ACP98088 5654 aa3.04□□□□□ -1.92
LIG1-209ENST00000596104 CCDC179H3BU77 68 aa3.03□□□□□ -1.92
LIG1-209ENST00000596104 KRTAP19-4Q3LI73 84 aa3.03□□□□□ -1.92
LIG1-209ENST00000596104 MUC5BQ9HC84 5762 aaPredicted RBP3□□□□□ -1.93
LIG1-209ENST00000596104 MT1AP04731 61 aa3□□□□□ -1.93
LIG1-209ENST00000596104 KRTAP6-1Q3LI64 71 aa3□□□□□ -1.93
LIG1-209ENST00000596104 ATP5EP56381 51 aaPredicted RBP2.99□□□□□ -1.93
LIG1-209ENST00000596104 KRTAP25-1Q3LHN0 102 aa2.97□□□□□ -1.93
LIG1-209ENST00000596104 LCE3CQ5T5A8 94 aa2.95□□□□□ -1.94
LIG1-209ENST00000596104 OBSCNQ5VST9 7968 aa2.94□□□□□ -1.94
LIG1-209ENST00000596104 TMEM258P61165 79 aa2.94□□□□□ -1.94
LIG1-209ENST00000596104 KRTAP15-1Q3LI76 137 aa2.94□□□□□ -1.94
LIG1-209ENST00000596104 PRR15LQ9BU68 103 aa2.94□□□□□ -1.94
LIG1-209ENST00000596104 KRTAP9-9Q9BYP9 154 aa2.91□□□□□ -1.94
LIG1-209ENST00000596104 KRTAP9-4Q9BYQ2 154 aa2.91□□□□□ -1.94
LIG1-209ENST00000596104 KRTAP6-2Q3LI66 62 aa2.9□□□□□ -1.95
LIG1-209ENST00000596104 LINC01558Q9Y6Z2 57 aa2.89□□□□□ -1.95
LIG1-209ENST00000596104 UQCR11O14957 56 aa2.86□□□□□ -1.95
LIG1-209ENST00000596104 KRTAP23-1A1A580 65 aa2.85□□□□□ -1.95
LIG1-209ENST00000596104 KRTAP9-6A8MVA2 160 aa2.83□□□□□ -1.96
LIG1-209ENST00000596104 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
LIG1-209ENST00000596104 MIR22HGQ0VDD5 57 aa2.77□□□□□ -1.97
LIG1-209ENST00000596104 V9GYY9 64 aa2.77□□□□□ -1.97
LIG1-209ENST00000596104 Q1T7F1 81 aa2.75□□□□□ -1.97
LIG1-209ENST00000596104 K7ERS5 55 aa2.74□□□□□ -1.97
LIG1-209ENST00000596104 MT3P25713 68 aa2.74□□□□□ -1.97
LIG1-209ENST00000596104 PCP4P48539 62 aa2.74□□□□□ -1.97
LIG1-209ENST00000596104 PSPHP1O15172 72 aa2.72□□□□□ -1.97
LIG1-209ENST00000596104 RPS28P62857 69 aaKnown RBP2.71□□□□□ -1.98
LIG1-209ENST00000596104 H3BS24 57 aa2.7□□□□□ -1.98
LIG1-209ENST00000596104 A6NED7 52 aa2.64□□□□□ -1.99
LIG1-209ENST00000596104 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
LIG1-209ENST00000596104 CDC42SE1Q9NRR8 79 aa2.58□□□□□ -2
LIG1-209ENST00000596104 ROMO1P60602 79 aa2.53□□□□□ -2
LIG1-209ENST00000596104 KRTAP4-2Q9BYR5 136 aa2.49□□□□□ -2.01
LIG1-209ENST00000596104 LCE1BQ5T7P3 118 aa2.44□□□□□ -2.02
LIG1-209ENST00000596104 A0A0A0MQY5 61 aa2.4□□□□□ -2.03
LIG1-209ENST00000596104 LCE1CQ5T751 118 aa2.4□□□□□ -2.03
LIG1-209ENST00000596104 BRK1Q8WUW1 75 aa2.37□□□□□ -2.03
LIG1-209ENST00000596104 KRTAP4-12Q9BQ66 201 aa2.32□□□□□ -2.04
LIG1-209ENST00000596104 PMAIP1Q13794 54 aa2.24□□□□□ -2.05
LIG1-209ENST00000596104 KRTAP5-11Q6L8G4 156 aa2.23□□□□□ -2.05
LIG1-209ENST00000596104 LCE1FQ5T754 118 aa2.19□□□□□ -2.06
LIG1-209ENST00000596104 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
LIG1-209ENST00000596104 PRO0628Q9UI54 55 aa2.16□□□□□ -2.06
LIG1-209ENST00000596104 PRAC1Q96KF2 57 aa2.12□□□□□ -2.07
LIG1-209ENST00000596104 PHGR1C9JFL3 82 aa2.1□□□□□ -2.07
LIG1-209ENST00000596104 LCE3DQ9BYE3 92 aa2.07□□□□□ -2.08
LIG1-209ENST00000596104 KTN1-AS1Q86SY8 53 aa2.04□□□□□ -2.08
LIG1-209ENST00000596104 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
LIG1-209ENST00000596104 LCE3EQ5T5B0 92 aa1.91□□□□□ -2.1
LIG1-209ENST00000596104 KRTAP4-4Q9BYR3 166 aa1.84□□□□□ -2.11
LIG1-209ENST00000596104 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
LIG1-209ENST00000596104 LUZP6Q538Z0 58 aa1.8□□□□□ -2.12
LIG1-209ENST00000596104 NDUFAF8A1L188 74 aa1.79□□□□□ -2.12
LIG1-209ENST00000596104 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
LIG1-209ENST00000596104 INE1O15225 51 aa1.33□□□□□ -2.2
LIG1-209ENST00000596104 PRM1P04553 51 aa1.28□□□□□ -2.2
LIG1-209ENST00000596104 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms