RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 KRTAP8-1Q8IUC2 63 aa1.44□□□□□ -2.18
VMP1-216ENST00000592790 SYNE2Q8WXH0 6885 aaKnown RBP1.43□□□□□ -2.18
VMP1-216ENST00000592790 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.42□□□□□ -2.18
VMP1-216ENST00000592790 LCE1FQ5T754 118 aa1.42□□□□□ -2.18
VMP1-216ENST00000592790 KRTAP20-1Q3LI63 56 aa1.41□□□□□ -2.18
VMP1-216ENST00000592790 LCE1AQ5T7P2 110 aa1.41□□□□□ -2.18
VMP1-216ENST00000592790 FSIP2Q5CZC0 6907 aa1.4□□□□□ -2.18
VMP1-216ENST00000592790 RNF213Q63HN8 5207 aa1.39□□□□□ -2.19
VMP1-216ENST00000592790 KRTAP19-8Q3LI54 63 aa1.39□□□□□ -2.19
VMP1-216ENST00000592790 MT2AP02795 61 aa1.38□□□□□ -2.19
VMP1-216ENST00000592790 MT1HP80294 61 aa1.38□□□□□ -2.19
VMP1-216ENST00000592790 KRTAP19-2Q3LHN2 52 aa1.38□□□□□ -2.19
VMP1-216ENST00000592790 SSPOA2VEC9 5147 aa1.38□□□□□ -2.19
VMP1-216ENST00000592790 DSTQ03001 7570 aaKnown RBP1.36□□□□□ -2.19
VMP1-216ENST00000592790 MT1FP04733 61 aa1.35□□□□□ -2.19
VMP1-216ENST00000592790 MUC5BQ9HC84 5762 aaPredicted RBP1.34□□□□□ -2.19
VMP1-216ENST00000592790 LCE3EQ5T5B0 92 aa1.34□□□□□ -2.2
VMP1-216ENST00000592790 MT1XP80297 61 aa1.32□□□□□ -2.2
VMP1-216ENST00000592790 KRTAP10-5P60370 271 aa1.32□□□□□ -2.2
VMP1-216ENST00000592790 MT1BP07438 61 aa1.31□□□□□ -2.2
VMP1-216ENST00000592790 KRTAP19-5Q3LI72 72 aa1.3□□□□□ -2.2
VMP1-216ENST00000592790 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
VMP1-216ENST00000592790 MT3P25713 68 aa1.28□□□□□ -2.2
VMP1-216ENST00000592790 KRTAP2-2Q9BYT5 123 aa1.28□□□□□ -2.2
VMP1-216ENST00000592790 NEBP20929 6669 aa1.28□□□□□ -2.2
VMP1-216ENST00000592790 SPRR2EP22531 72 aa1.26□□□□□ -2.21
VMP1-216ENST00000592790 SPRR2BP35325 72 aa1.26□□□□□ -2.21
VMP1-216ENST00000592790 SPRR2AP35326 72 aa1.26□□□□□ -2.21
VMP1-216ENST00000592790 HMCN1Q96RW7 5635 aa1.25□□□□□ -2.21
VMP1-216ENST00000592790 SPRR2DP22532 72 aa1.25□□□□□ -2.21
VMP1-216ENST00000592790 KRTAP5-9P26371 169 aa1.24□□□□□ -2.21
VMP1-216ENST00000592790 USH2AO75445 5202 aa1.24□□□□□ -2.21
VMP1-216ENST00000592790 MUC19Q7Z5P9 8384 aa1.23□□□□□ -2.21
VMP1-216ENST00000592790 SPRR2FQ96RM1 72 aa1.23□□□□□ -2.21
VMP1-216ENST00000592790 SYNE1Q8NF91 8797 aaKnown RBP1.23□□□□□ -2.21
VMP1-216ENST00000592790 KRTAP2-3P0C7H8 128 aa1.22□□□□□ -2.21
VMP1-216ENST00000592790 KRTAP2-4Q9BYR9 128 aa1.22□□□□□ -2.21
VMP1-216ENST00000592790 LCE1EQ5T753 118 aa1.22□□□□□ -2.21
VMP1-216ENST00000592790 LCE3DQ9BYE3 92 aa1.21□□□□□ -2.22
VMP1-216ENST00000592790 KRTAP12-4P60329 112 aa1.2□□□□□ -2.22
VMP1-216ENST00000592790 KRTAP2-1Q9BYU5 128 aa1.2□□□□□ -2.22
VMP1-216ENST00000592790 MT1LQ93083 61 aa1.19□□□□□ -2.22
VMP1-216ENST00000592790 MT1EP04732 61 aa1.18□□□□□ -2.22
VMP1-216ENST00000592790 KRTAP5-2Q701N4 177 aa1.18□□□□□ -2.22
VMP1-216ENST00000592790 MT1GP13640 62 aa1.18□□□□□ -2.22
VMP1-216ENST00000592790 KRTAP5-4Q6L8H1 288 aa1.15□□□□□ -2.23
VMP1-216ENST00000592790 KRTAP19-7Q3SYF9 63 aa1.14□□□□□ -2.23
VMP1-216ENST00000592790 KRTAP19-3Q7Z4W3 81 aa1.13□□□□□ -2.23
VMP1-216ENST00000592790 AHNAK2Q8IVF2 5795 aa1.12□□□□□ -2.23
VMP1-216ENST00000592790 KRTAP6-3Q3LI67 103 aa1.12□□□□□ -2.23
VMP1-216ENST00000592790 KRTAP19-6Q3LI70 58 aa1.12□□□□□ -2.23
VMP1-216ENST00000592790 KRTAP5-11Q6L8G4 156 aa1.11□□□□□ -2.23
VMP1-216ENST00000592790 MT1MQ8N339 61 aa1.11□□□□□ -2.23
VMP1-216ENST00000592790 KMT2DO14686 5537 aa1.1□□□□□ -2.23
VMP1-216ENST00000592790 KRTAP9-6A8MVA2 160 aa1.1□□□□□ -2.23
VMP1-216ENST00000592790 MT1AP04731 61 aa1.08□□□□□ -2.24
VMP1-216ENST00000592790 MT4P47944 62 aa1.08□□□□□ -2.24
VMP1-216ENST00000592790 LCE1CQ5T751 118 aa1.07□□□□□ -2.24
VMP1-216ENST00000592790 FCGBPQ9Y6R7 5405 aaPredicted RBP1.07□□□□□ -2.24
VMP1-216ENST00000592790 KRTAP5-7Q6L8G8 165 aa1.04□□□□□ -2.24
VMP1-216ENST00000592790 KRTAP4-4Q9BYR3 166 aa1.03□□□□□ -2.24
VMP1-216ENST00000592790 PRM1P04553 51 aa1.01□□□□□ -2.25
VMP1-216ENST00000592790 KRTAP4-3Q9BYR4 195 aa1.01□□□□□ -2.25
VMP1-216ENST00000592790 KRTAP5-10Q6L8G5 202 aa0.99□□□□□ -2.25
VMP1-216ENST00000592790 MUC12Q9UKN1 5478 aa0.98□□□□□ -2.25
VMP1-216ENST00000592790 KRTAP5-1Q6L8H4 278 aa0.97□□□□□ -2.25
VMP1-216ENST00000592790 KRTAP6-1Q3LI64 71 aa0.97□□□□□ -2.25
VMP1-216ENST00000592790 MDN1Q9NU22 5596 aa0.97□□□□□ -2.25
VMP1-216ENST00000592790 LCE1BQ5T7P3 118 aa0.96□□□□□ -2.26
VMP1-216ENST00000592790 KRTAP6-2Q3LI66 62 aa0.94□□□□□ -2.26
VMP1-216ENST00000592790 KRTAP5-5Q701N2 237 aaPredicted RBP0.93□□□□□ -2.26
VMP1-216ENST00000592790 KRTAP5-8O75690 187 aa0.92□□□□□ -2.26
VMP1-216ENST00000592790 MUC5ACP98088 5654 aa0.89□□□□□ -2.27
VMP1-216ENST00000592790 PHGR1C9JFL3 82 aa0.82□□□□□ -2.28
VMP1-216ENST00000592790 KRTAP20-2Q3LI61 65 aa0.76□□□□□ -2.29
VMP1-216ENST00000592790 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
VMP1-216ENST00000592790 KRTAP21-2Q3LI59 83 aa0.59□□□□□ -2.32
VMP1-216ENST00000592790 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 110.7 ms