RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 LINC01558Q9Y6Z2 57 aa4.13□□□□□ -1.75
LIG3-214ENST00000592244 Q1T7F1 81 aa4.1□□□□□ -1.75
LIG3-214ENST00000592244 KRTAP19-7Q3SYF9 63 aa4.09□□□□□ -1.75
LIG3-214ENST00000592244 KRTAP4-2Q9BYR5 136 aa4.09□□□□□ -1.75
LIG3-214ENST00000592244 MT1EP04732 61 aa4.08□□□□□ -1.76
LIG3-214ENST00000592244 A8MU10 97 aa4.07□□□□□ -1.76
LIG3-214ENST00000592244 KRTAP19-3Q7Z4W3 81 aa4.07□□□□□ -1.76
LIG3-214ENST00000592244 KRTAP4-9Q9BYQ8 210 aa4.07□□□□□ -1.76
LIG3-214ENST00000592244 LCE5AQ5TCM9 118 aa4.06□□□□□ -1.76
LIG3-214ENST00000592244 TNP1P09430 55 aa4.05□□□□□ -1.76
LIG3-214ENST00000592244 PP632Q6XCG6 107 aa4.03□□□□□ -1.76
LIG3-214ENST00000592244 NDUFAF8A1L188 74 aa4.01□□□□□ -1.77
LIG3-214ENST00000592244 UQCR11O14957 56 aa4.01□□□□□ -1.77
LIG3-214ENST00000592244 KRTAP19-5Q3LI72 72 aa4.01□□□□□ -1.77
LIG3-214ENST00000592244 PSPHP1O15172 72 aa4□□□□□ -1.77
LIG3-214ENST00000592244 LCE4AQ5TA78 99 aa4□□□□□ -1.77
LIG3-214ENST00000592244 MT1GP13640 62 aa3.99□□□□□ -1.77
LIG3-214ENST00000592244 C10orf95Q9H7T3 257 aa3.96□□□□□ -1.78
LIG3-214ENST00000592244 DSTQ03001 7570 aaKnown RBP3.96□□□□□ -1.78
LIG3-214ENST00000592244 A6NED7 52 aa3.93□□□□□ -1.78
LIG3-214ENST00000592244 LCE3AQ5TA76 89 aa3.93□□□□□ -1.78
LIG3-214ENST00000592244 MIR22HGQ0VDD5 57 aa3.92□□□□□ -1.78
LIG3-214ENST00000592244 K7ERS5 55 aa3.91□□□□□ -1.78
LIG3-214ENST00000592244 KRTAP5-3Q6L8H2 238 aa3.91□□□□□ -1.78
LIG3-214ENST00000592244 MT1LQ93083 61 aa3.9□□□□□ -1.79
LIG3-214ENST00000592244 MT1MQ8N339 61 aa3.88□□□□□ -1.79
LIG3-214ENST00000592244 KRTAP4-11Q9BYQ6 195 aa3.87□□□□□ -1.79
LIG3-214ENST00000592244 CDC42SE1Q9NRR8 79 aa3.84□□□□□ -1.79
LIG3-214ENST00000592244 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
LIG3-214ENST00000592244 KRTAP25-1Q3LHN0 102 aa3.82□□□□□ -1.8
LIG3-214ENST00000592244 BRK1Q8WUW1 75 aa3.76□□□□□ -1.81
LIG3-214ENST00000592244 GPR98Q8WXG9 6306 aa3.75□□□□□ -1.81
LIG3-214ENST00000592244 MT4P47944 62 aa3.74□□□□□ -1.81
LIG3-214ENST00000592244 PRO0628Q9UI54 55 aa3.74□□□□□ -1.81
LIG3-214ENST00000592244 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
LIG3-214ENST00000592244 KRTAP5-4Q6L8H1 288 aa3.69□□□□□ -1.82
LIG3-214ENST00000592244 HMCN1Q96RW7 5635 aa3.69□□□□□ -1.82
LIG3-214ENST00000592244 MT3P25713 68 aa3.64□□□□□ -1.83
LIG3-214ENST00000592244 ROMO1P60602 79 aa3.59□□□□□ -1.83
LIG3-214ENST00000592244 KRTAP12-4P60329 112 aa3.56□□□□□ -1.84
LIG3-214ENST00000592244 PMAIP1Q13794 54 aa3.56□□□□□ -1.84
LIG3-214ENST00000592244 KRTAP5-5Q701N2 237 aaPredicted RBP3.53□□□□□ -1.84
LIG3-214ENST00000592244 SPRR5A0A1B0GTR4 108 aa3.52□□□□□ -1.85
LIG3-214ENST00000592244 AHNAK2Q8IVF2 5795 aa3.52□□□□□ -1.85
LIG3-214ENST00000592244 LCE3CQ5T5A8 94 aa3.51□□□□□ -1.85
LIG3-214ENST00000592244 LUZP6Q538Z0 58 aa3.5□□□□□ -1.85
LIG3-214ENST00000592244 KRTAP20-2Q3LI61 65 aa3.49□□□□□ -1.85
LIG3-214ENST00000592244 KRTAP5-10Q6L8G5 202 aa3.48□□□□□ -1.85
LIG3-214ENST00000592244 KTN1-AS1Q86SY8 53 aa3.38□□□□□ -1.87
LIG3-214ENST00000592244 KRTAP5-7Q6L8G8 165 aa3.37□□□□□ -1.87
LIG3-214ENST00000592244 MT1AP04731 61 aa3.34□□□□□ -1.87
LIG3-214ENST00000592244 SYNE1Q8NF91 8797 aaKnown RBP3.33□□□□□ -1.88
LIG3-214ENST00000592244 KRTAP6-1Q3LI64 71 aa3.28□□□□□ -1.88
LIG3-214ENST00000592244 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
LIG3-214ENST00000592244 KRTAP9-6A8MVA2 160 aa3.22□□□□□ -1.89
LIG3-214ENST00000592244 LCE1FQ5T754 118 aa3.17□□□□□ -1.9
LIG3-214ENST00000592244 KRTAP6-2Q3LI66 62 aa3.15□□□□□ -1.91
LIG3-214ENST00000592244 KRTAP5-8O75690 187 aa3.06□□□□□ -1.92
LIG3-214ENST00000592244 OBSCNQ5VST9 7968 aa3.02□□□□□ -1.93
LIG3-214ENST00000592244 MUC5BQ9HC84 5762 aaPredicted RBP2.93□□□□□ -1.94
LIG3-214ENST00000592244 AHNAKQ09666 5890 aaKnown RBP2.91□□□□□ -1.94
LIG3-214ENST00000592244 MUC5ACP98088 5654 aa2.91□□□□□ -1.94
LIG3-214ENST00000592244 KRTAP5-1Q6L8H4 278 aa2.89□□□□□ -1.95
LIG3-214ENST00000592244 LCE1EQ5T753 118 aa2.83□□□□□ -1.96
LIG3-214ENST00000592244 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.83□□□□□ -1.96
LIG3-214ENST00000592244 LCE3EQ5T5B0 92 aa2.68□□□□□ -1.98
LIG3-214ENST00000592244 LCE1BQ5T7P3 118 aa2.65□□□□□ -1.99
LIG3-214ENST00000592244 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
LIG3-214ENST00000592244 KRTAP5-11Q6L8G4 156 aa2.62□□□□□ -1.99
LIG3-214ENST00000592244 LCE3DQ9BYE3 92 aa2.56□□□□□ -2
LIG3-214ENST00000592244 KRTAP4-4Q9BYR3 166 aa2.37□□□□□ -2.03
LIG3-214ENST00000592244 INE1O15225 51 aa2.36□□□□□ -2.03
LIG3-214ENST00000592244 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.07
LIG3-214ENST00000592244 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
LIG3-214ENST00000592244 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.12
LIG3-214ENST00000592244 PRM1P04553 51 aa1.83□□□□□ -2.12
LIG3-214ENST00000592244 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
LIG3-214ENST00000592244 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 66.8 ms