RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
ZNF540-206ENST00000589117 PRO2289Q9P1D8 64 aa3□□□□□ -1.93
ZNF540-206ENST00000589117 LCE3AQ5TA76 89 aa2.99□□□□□ -1.93
ZNF540-206ENST00000589117 SPRR5A0A1B0GTR4 108 aa2.97□□□□□ -1.93
ZNF540-206ENST00000589117 MT1BP07438 61 aa2.97□□□□□ -1.93
ZNF540-206ENST00000589117 KRTAP10-5P60370 271 aa2.96□□□□□ -1.94
ZNF540-206ENST00000589117 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
ZNF540-206ENST00000589117 MT1XP80297 61 aa2.95□□□□□ -1.94
ZNF540-206ENST00000589117 KRTAP5-9P26371 169 aa2.93□□□□□ -1.94
ZNF540-206ENST00000589117 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.91□□□□□ -1.94
ZNF540-206ENST00000589117 KRTAP12-3P60328 96 aa2.9□□□□□ -1.95
ZNF540-206ENST00000589117 KRTAP10-7P60409 375 aaPredicted RBP2.85□□□□□ -1.95
ZNF540-206ENST00000589117 KRTAP19-5Q3LI72 72 aa2.74□□□□□ -1.97
ZNF540-206ENST00000589117 INE1O15225 51 aa2.67□□□□□ -1.98
ZNF540-206ENST00000589117 USH2AO75445 5202 aa2.64□□□□□ -1.99
ZNF540-206ENST00000589117 LCE3DQ9BYE3 92 aa2.63□□□□□ -1.99
ZNF540-206ENST00000589117 KRTAP19-7Q3SYF9 63 aa2.62□□□□□ -1.99
ZNF540-206ENST00000589117 LCE1EQ5T753 118 aa2.61□□□□□ -1.99
ZNF540-206ENST00000589117 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
ZNF540-206ENST00000589117 KMT2DO14686 5537 aa2.58□□□□□ -2
ZNF540-206ENST00000589117 MT1EP04732 61 aa2.57□□□□□ -2
ZNF540-206ENST00000589117 KRTAP9-6A8MVA2 160 aa2.56□□□□□ -2
ZNF540-206ENST00000589117 MT1LQ93083 61 aa2.56□□□□□ -2
ZNF540-206ENST00000589117 KRTAP5-4Q6L8H1 288 aa2.54□□□□□ -2
ZNF540-206ENST00000589117 SSPOA2VEC9 5147 aa2.53□□□□□ -2.01
ZNF540-206ENST00000589117 KRTAP2-3P0C7H8 128 aa2.48□□□□□ -2.01
ZNF540-206ENST00000589117 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
ZNF540-206ENST00000589117 KRTAP2-4Q9BYR9 128 aa2.48□□□□□ -2.01
ZNF540-206ENST00000589117 KRTAP2-1Q9BYU5 128 aa2.48□□□□□ -2.01
ZNF540-206ENST00000589117 MT1GP13640 62 aa2.46□□□□□ -2.02
ZNF540-206ENST00000589117 KRTAP19-3Q7Z4W3 81 aa2.44□□□□□ -2.02
ZNF540-206ENST00000589117 FSIP2Q5CZC0 6907 aa2.43□□□□□ -2.02
ZNF540-206ENST00000589117 MT1MQ8N339 61 aa2.4□□□□□ -2.02
ZNF540-206ENST00000589117 KRTAP6-3Q3LI67 103 aa2.38□□□□□ -2.03
ZNF540-206ENST00000589117 SPRR2FQ96RM1 72 aa2.37□□□□□ -2.03
ZNF540-206ENST00000589117 FCGBPQ9Y6R7 5405 aaPredicted RBP2.36□□□□□ -2.03
ZNF540-206ENST00000589117 KRTAP5-2Q701N4 177 aa2.35□□□□□ -2.03
ZNF540-206ENST00000589117 KRTAP5-8O75690 187 aa2.35□□□□□ -2.03
ZNF540-206ENST00000589117 KRTAP4-3Q9BYR4 195 aa2.35□□□□□ -2.03
ZNF540-206ENST00000589117 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
ZNF540-206ENST00000589117 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
ZNF540-206ENST00000589117 CRCT1Q9UGL9 99 aa2.31□□□□□ -2.04
ZNF540-206ENST00000589117 MUC12Q9UKN1 5478 aa2.3□□□□□ -2.04
ZNF540-206ENST00000589117 GPR98Q8WXG9 6306 aa2.27□□□□□ -2.05
ZNF540-206ENST00000589117 MACF1Q9UPN3 7388 aaKnown RBP2.23□□□□□ -2.05
ZNF540-206ENST00000589117 DSTQ03001 7570 aaKnown RBP2.21□□□□□ -2.06
ZNF540-206ENST00000589117 KRTAP12-4P60329 112 aa2.2□□□□□ -2.06
ZNF540-206ENST00000589117 MT1AP04731 61 aa2.18□□□□□ -2.06
ZNF540-206ENST00000589117 SPRR2EP22531 72 aa2.18□□□□□ -2.06
ZNF540-206ENST00000589117 SPRR2BP35325 72 aa2.18□□□□□ -2.06
ZNF540-206ENST00000589117 SPRR2AP35326 72 aa2.18□□□□□ -2.06
ZNF540-206ENST00000589117 KRTAP6-1Q3LI64 71 aa2.14□□□□□ -2.07
ZNF540-206ENST00000589117 SYNE2Q8WXH0 6885 aaKnown RBP2.13□□□□□ -2.07
ZNF540-206ENST00000589117 MDN1Q9NU22 5596 aa2.13□□□□□ -2.07
ZNF540-206ENST00000589117 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
ZNF540-206ENST00000589117 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
ZNF540-206ENST00000589117 SPRR2DP22532 72 aa2.09□□□□□ -2.07
ZNF540-206ENST00000589117 SYNE1Q8NF91 8797 aaKnown RBP2.02□□□□□ -2.09
ZNF540-206ENST00000589117 KRTAP6-2Q3LI66 62 aa1.95□□□□□ -2.1
ZNF540-206ENST00000589117 PRM1P04553 51 aa1.91□□□□□ -2.1
ZNF540-206ENST00000589117 OBSCNQ5VST9 7968 aa1.89□□□□□ -2.11
ZNF540-206ENST00000589117 AHNAKQ09666 5890 aaKnown RBP1.84□□□□□ -2.12
ZNF540-206ENST00000589117 MT4P47944 62 aa1.8□□□□□ -2.12
ZNF540-206ENST00000589117 NEBP20929 6669 aa1.8□□□□□ -2.12
ZNF540-206ENST00000589117 LCE1CQ5T751 118 aa1.79□□□□□ -2.12
ZNF540-206ENST00000589117 LCE1BQ5T7P3 118 aa1.79□□□□□ -2.12
ZNF540-206ENST00000589117 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
ZNF540-206ENST00000589117 KRTAP20-1Q3LI63 56 aa1.73□□□□□ -2.13
ZNF540-206ENST00000589117 KRTAP5-7Q6L8G8 165 aa1.62□□□□□ -2.15
ZNF540-206ENST00000589117 MUC5ACP98088 5654 aa1.56□□□□□ -2.16
ZNF540-206ENST00000589117 MUC19Q7Z5P9 8384 aa1.55□□□□□ -2.16
ZNF540-206ENST00000589117 AHNAK2Q8IVF2 5795 aa1.53□□□□□ -2.16
ZNF540-206ENST00000589117 KRTAP5-10Q6L8G5 202 aa1.51□□□□□ -2.17
ZNF540-206ENST00000589117 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
ZNF540-206ENST00000589117 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
ZNF540-206ENST00000589117 PHGR1C9JFL3 82 aa1.14□□□□□ -2.23
ZNF540-206ENST00000589117 MUC16Q8WXI7 14507 aa0.75□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 90.7 ms