RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 KRTAP5-7Q6L8G8 165 aa4.05□□□□□ -1.76
VPS4B-202ENST00000588059 ATP5EP56381 51 aaPredicted RBP4.04□□□□□ -1.76
VPS4B-202ENST00000588059 KRTAP12-1P59990 96 aa4.04□□□□□ -1.76
VPS4B-202ENST00000588059 SMIM26A0A096LP01 95 aa4.03□□□□□ -1.76
VPS4B-202ENST00000588059 MT1GP13640 62 aa4.02□□□□□ -1.77
VPS4B-202ENST00000588059 KRTAP5-4Q6L8H1 288 aa4.02□□□□□ -1.77
VPS4B-202ENST00000588059 A8MU10 97 aa4.01□□□□□ -1.77
VPS4B-202ENST00000588059 PRR15LQ9BU68 103 aa4□□□□□ -1.77
VPS4B-202ENST00000588059 PP632Q6XCG6 107 aa3.98□□□□□ -1.77
VPS4B-202ENST00000588059 MT1MQ8N339 61 aa3.97□□□□□ -1.77
VPS4B-202ENST00000588059 KRTAP5-3Q6L8H2 238 aa3.96□□□□□ -1.78
VPS4B-202ENST00000588059 TMEM258P61165 79 aa3.95□□□□□ -1.78
VPS4B-202ENST00000588059 KRTAP19-5Q3LI72 72 aa3.94□□□□□ -1.78
VPS4B-202ENST00000588059 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
VPS4B-202ENST00000588059 LINC01558Q9Y6Z2 57 aa3.94□□□□□ -1.78
VPS4B-202ENST00000588059 KRTAP4-3Q9BYR4 195 aa3.9□□□□□ -1.79
VPS4B-202ENST00000588059 MT1LQ93083 61 aa3.89□□□□□ -1.79
VPS4B-202ENST00000588059 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
VPS4B-202ENST00000588059 C10orf95Q9H7T3 257 aa3.87□□□□□ -1.79
VPS4B-202ENST00000588059 UQCR11O14957 56 aa3.86□□□□□ -1.79
VPS4B-202ENST00000588059 TNP1P09430 55 aa3.86□□□□□ -1.79
VPS4B-202ENST00000588059 KRTAP20-2Q3LI61 65 aa3.81□□□□□ -1.8
VPS4B-202ENST00000588059 LCE3AQ5TA76 89 aa3.81□□□□□ -1.8
VPS4B-202ENST00000588059 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
VPS4B-202ENST00000588059 MIR22HGQ0VDD5 57 aa3.78□□□□□ -1.8
VPS4B-202ENST00000588059 KRTAP23-1A1A580 65 aa3.76□□□□□ -1.81
VPS4B-202ENST00000588059 PSPHP1O15172 72 aa3.75□□□□□ -1.81
VPS4B-202ENST00000588059 V9GYY9 64 aa3.75□□□□□ -1.81
VPS4B-202ENST00000588059 K7ERS5 55 aa3.72□□□□□ -1.81
VPS4B-202ENST00000588059 Q1T7F1 81 aa3.7□□□□□ -1.82
VPS4B-202ENST00000588059 KRTAP5-5Q701N2 237 aaPredicted RBP3.69□□□□□ -1.82
VPS4B-202ENST00000588059 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
VPS4B-202ENST00000588059 KRTAP12-4P60329 112 aa3.65□□□□□ -1.83
VPS4B-202ENST00000588059 KRTAP25-1Q3LHN0 102 aa3.65□□□□□ -1.83
VPS4B-202ENST00000588059 A6NED7 52 aa3.63□□□□□ -1.83
VPS4B-202ENST00000588059 PCP4P48539 62 aa3.61□□□□□ -1.83
VPS4B-202ENST00000588059 AHNAKQ09666 5890 aaKnown RBP3.61□□□□□ -1.83
VPS4B-202ENST00000588059 SYNE1Q8NF91 8797 aaKnown RBP3.6□□□□□ -1.83
VPS4B-202ENST00000588059 MUC5ACP98088 5654 aa3.55□□□□□ -1.84
VPS4B-202ENST00000588059 RPS28P62857 69 aaKnown RBP3.54□□□□□ -1.84
VPS4B-202ENST00000588059 MUC5BQ9HC84 5762 aaPredicted RBP3.52□□□□□ -1.85
VPS4B-202ENST00000588059 CDC42SE1Q9NRR8 79 aa3.51□□□□□ -1.85
VPS4B-202ENST00000588059 KRTAP5-8O75690 187 aa3.47□□□□□ -1.85
VPS4B-202ENST00000588059 ROMO1P60602 79 aa3.46□□□□□ -1.86
VPS4B-202ENST00000588059 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
VPS4B-202ENST00000588059 KRTAP15-1Q3LI76 137 aa3.44□□□□□ -1.86
VPS4B-202ENST00000588059 A0A0A0MQY5 61 aa3.41□□□□□ -1.86
VPS4B-202ENST00000588059 LCE3CQ5T5A8 94 aa3.38□□□□□ -1.87
VPS4B-202ENST00000588059 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
VPS4B-202ENST00000588059 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
VPS4B-202ENST00000588059 MT1AP04731 61 aa3.3□□□□□ -1.88
VPS4B-202ENST00000588059 KRTAP6-2Q3LI66 62 aa3.23□□□□□ -1.89
VPS4B-202ENST00000588059 KRTAP9-6A8MVA2 160 aa3.17□□□□□ -1.9
VPS4B-202ENST00000588059 KRTAP5-1Q6L8H4 278 aa3.16□□□□□ -1.9
VPS4B-202ENST00000588059 BRK1Q8WUW1 75 aa3.16□□□□□ -1.9
VPS4B-202ENST00000588059 MT3P25713 68 aa3.02□□□□□ -1.93
VPS4B-202ENST00000588059 PMAIP1Q13794 54 aa2.96□□□□□ -1.94
VPS4B-202ENST00000588059 LCE1EQ5T753 118 aa2.87□□□□□ -1.95
VPS4B-202ENST00000588059 PRAC1Q96KF2 57 aa2.86□□□□□ -1.95
VPS4B-202ENST00000588059 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
VPS4B-202ENST00000588059 PRO0628Q9UI54 55 aa2.74□□□□□ -1.97
VPS4B-202ENST00000588059 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.7□□□□□ -1.98
VPS4B-202ENST00000588059 LCE1CQ5T751 118 aa2.66□□□□□ -1.98
VPS4B-202ENST00000588059 KTN1-AS1Q86SY8 53 aa2.62□□□□□ -1.99
VPS4B-202ENST00000588059 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
VPS4B-202ENST00000588059 NDUFAF8A1L188 74 aa2.55□□□□□ -2
VPS4B-202ENST00000588059 LCE1FQ5T754 118 aa2.47□□□□□ -2.01
VPS4B-202ENST00000588059 LCE3DQ9BYE3 92 aa2.45□□□□□ -2.02
VPS4B-202ENST00000588059 PHGR1C9JFL3 82 aa2.43□□□□□ -2.02
VPS4B-202ENST00000588059 LUZP6Q538Z0 58 aa2.42□□□□□ -2.02
VPS4B-202ENST00000588059 LCE3EQ5T5B0 92 aa2.31□□□□□ -2.04
VPS4B-202ENST00000588059 KRTAP4-4Q9BYR3 166 aa2.24□□□□□ -2.05
VPS4B-202ENST00000588059 KRTAP21-2Q3LI59 83 aa2.19□□□□□ -2.06
VPS4B-202ENST00000588059 MUC19Q7Z5P9 8384 aa2.08□□□□□ -2.08
VPS4B-202ENST00000588059 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
VPS4B-202ENST00000588059 PRM1P04553 51 aa1.78□□□□□ -2.12
VPS4B-202ENST00000588059 INE1O15225 51 aa1.55□□□□□ -2.16
VPS4B-202ENST00000588059 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 63.6 ms