RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 C10orf95Q9H7T3 257 aa2.58□□□□□ -2
LIG3-206ENST00000586058 PP632Q6XCG6 107 aa2.56□□□□□ -2
LIG3-206ENST00000586058 KRTAP10-5P60370 271 aa2.53□□□□□ -2
LIG3-206ENST00000586058 MT1XP80297 61 aa2.53□□□□□ -2
LIG3-206ENST00000586058 KRTAP10-12P60413 245 aa2.5□□□□□ -2.01
LIG3-206ENST00000586058 KRTAP19-6Q3LI70 58 aa2.49□□□□□ -2.01
LIG3-206ENST00000586058 KRTAP5-1Q6L8H4 278 aa2.44□□□□□ -2.02
LIG3-206ENST00000586058 LCE3AQ5TA76 89 aa2.43□□□□□ -2.02
LIG3-206ENST00000586058 CRCT1Q9UGL9 99 aa2.41□□□□□ -2.02
LIG3-206ENST00000586058 MT3P25713 68 aa2.4□□□□□ -2.03
LIG3-206ENST00000586058 USH2AO75445 5202 aa2.37□□□□□ -2.03
LIG3-206ENST00000586058 KRTAP8-1Q8IUC2 63 aa2.37□□□□□ -2.03
LIG3-206ENST00000586058 SSPOA2VEC9 5147 aa2.36□□□□□ -2.03
LIG3-206ENST00000586058 KRTAP12-3P60328 96 aa2.36□□□□□ -2.03
LIG3-206ENST00000586058 KRTAP5-4Q6L8H1 288 aa2.35□□□□□ -2.03
LIG3-206ENST00000586058 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
LIG3-206ENST00000586058 KRTAP5-9P26371 169 aa2.32□□□□□ -2.04
LIG3-206ENST00000586058 KRTAP19-5Q3LI72 72 aa2.31□□□□□ -2.04
LIG3-206ENST00000586058 FSIP2Q5CZC0 6907 aa2.29□□□□□ -2.04
LIG3-206ENST00000586058 KRTAP9-6A8MVA2 160 aa2.28□□□□□ -2.04
LIG3-206ENST00000586058 INE1O15225 51 aa2.28□□□□□ -2.04
LIG3-206ENST00000586058 SPRR2FQ96RM1 72 aa2.26□□□□□ -2.05
LIG3-206ENST00000586058 MT1EP04732 61 aa2.24□□□□□ -2.05
LIG3-206ENST00000586058 KRTAP19-7Q3SYF9 63 aa2.24□□□□□ -2.05
LIG3-206ENST00000586058 FCGBPQ9Y6R7 5405 aaPredicted RBP2.22□□□□□ -2.05
LIG3-206ENST00000586058 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
LIG3-206ENST00000586058 LCE3CQ5T5A8 94 aa2.19□□□□□ -2.06
LIG3-206ENST00000586058 MT1LQ93083 61 aa2.19□□□□□ -2.06
LIG3-206ENST00000586058 OBSCNQ5VST9 7968 aa2.19□□□□□ -2.06
LIG3-206ENST00000586058 KRTAP19-3Q7Z4W3 81 aa2.18□□□□□ -2.06
LIG3-206ENST00000586058 MACF1Q9UPN3 7388 aaKnown RBP2.18□□□□□ -2.06
LIG3-206ENST00000586058 MT1GP13640 62 aa2.17□□□□□ -2.06
LIG3-206ENST00000586058 KRTAP6-3Q3LI67 103 aa2.17□□□□□ -2.06
LIG3-206ENST00000586058 KMT2DO14686 5537 aa2.17□□□□□ -2.06
LIG3-206ENST00000586058 SPRR2EP22531 72 aa2.16□□□□□ -2.06
LIG3-206ENST00000586058 SPRR2BP35325 72 aa2.16□□□□□ -2.06
LIG3-206ENST00000586058 SPRR2AP35326 72 aa2.16□□□□□ -2.06
LIG3-206ENST00000586058 SPRR5A0A1B0GTR4 108 aa2.15□□□□□ -2.07
LIG3-206ENST00000586058 MT1MQ8N339 61 aa2.12□□□□□ -2.07
LIG3-206ENST00000586058 SPRR2DP22532 72 aa2.09□□□□□ -2.07
LIG3-206ENST00000586058 KRTAP4-3Q9BYR4 195 aa2.06□□□□□ -2.08
LIG3-206ENST00000586058 SYNE2Q8WXH0 6885 aaKnown RBP2.06□□□□□ -2.08
LIG3-206ENST00000586058 MUC12Q9UKN1 5478 aa1.98□□□□□ -2.09
LIG3-206ENST00000586058 KRTAP5-2Q701N4 177 aa1.97□□□□□ -2.09
LIG3-206ENST00000586058 KRTAP2-3P0C7H8 128 aa1.92□□□□□ -2.1
LIG3-206ENST00000586058 KRTAP20-1Q3LI63 56 aa1.92□□□□□ -2.1
LIG3-206ENST00000586058 KRTAP2-4Q9BYR9 128 aa1.92□□□□□ -2.1
LIG3-206ENST00000586058 LCE3EQ5T5B0 92 aa1.9□□□□□ -2.11
LIG3-206ENST00000586058 DSTQ03001 7570 aaKnown RBP1.89□□□□□ -2.11
LIG3-206ENST00000586058 MT1AP04731 61 aa1.89□□□□□ -2.11
LIG3-206ENST00000586058 MDN1Q9NU22 5596 aa1.89□□□□□ -2.11
LIG3-206ENST00000586058 KRTAP2-1Q9BYU5 128 aa1.88□□□□□ -2.11
LIG3-206ENST00000586058 NEBP20929 6669 aa1.87□□□□□ -2.11
LIG3-206ENST00000586058 KRTAP5-5Q701N2 237 aaPredicted RBP1.87□□□□□ -2.11
LIG3-206ENST00000586058 KRTAP12-4P60329 112 aa1.85□□□□□ -2.11
LIG3-206ENST00000586058 KRTAP6-1Q3LI64 71 aa1.83□□□□□ -2.12
LIG3-206ENST00000586058 MT4P47944 62 aa1.79□□□□□ -2.12
LIG3-206ENST00000586058 KRTAP20-2Q3LI61 65 aa1.71□□□□□ -2.14
LIG3-206ENST00000586058 KRTAP6-2Q3LI66 62 aa1.71□□□□□ -2.14
LIG3-206ENST00000586058 LCE1CQ5T751 118 aa1.69□□□□□ -2.14
LIG3-206ENST00000586058 LCE1BQ5T7P3 118 aa1.69□□□□□ -2.14
LIG3-206ENST00000586058 SYNE1Q8NF91 8797 aaKnown RBP1.69□□□□□ -2.14
LIG3-206ENST00000586058 LCE3DQ9BYE3 92 aa1.67□□□□□ -2.14
LIG3-206ENST00000586058 GPR98Q8WXG9 6306 aa1.65□□□□□ -2.15
LIG3-206ENST00000586058 KRTAP5-8O75690 187 aa1.63□□□□□ -2.15
LIG3-206ENST00000586058 HMCN1Q96RW7 5635 aa1.54□□□□□ -2.16
LIG3-206ENST00000586058 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
LIG3-206ENST00000586058 KRTAP5-10Q6L8G5 202 aa1.42□□□□□ -2.18
LIG3-206ENST00000586058 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
LIG3-206ENST00000586058 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
LIG3-206ENST00000586058 PRM1P04553 51 aa1.39□□□□□ -2.19
LIG3-206ENST00000586058 AHNAKQ09666 5890 aaKnown RBP1.27□□□□□ -2.21
LIG3-206ENST00000586058 MUC5ACP98088 5654 aa1.24□□□□□ -2.21
LIG3-206ENST00000586058 KRTAP21-2Q3LI59 83 aa1.24□□□□□ -2.21
LIG3-206ENST00000586058 MUC5BQ9HC84 5762 aaPredicted RBP1.19□□□□□ -2.22
LIG3-206ENST00000586058 PHGR1C9JFL3 82 aa1.04□□□□□ -2.24
LIG3-206ENST00000586058 KRTAP21-1Q3LI58 79 aa0.91□□□□□ -2.26
LIG3-206ENST00000586058 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 69.3 ms