RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PKHD1P08F94 4074 aa1.77□□□□□ -2.13
SMCHD1-208ENST00000583344 HMCN2Q8NDA2 5059 aa1.77□□□□□ -2.13
SMCHD1-208ENST00000583344 CRIPTQ9P021 101 aa1.76□□□□□ -2.13
SMCHD1-208ENST00000583344 S4R3F8 94 aa1.76□□□□□ -2.13
SMCHD1-208ENST00000583344 FAT1Q14517 4588 aa1.76□□□□□ -2.13
SMCHD1-208ENST00000583344 LRP1Q07954 4544 aaKnown RBP1.76□□□□□ -2.13
SMCHD1-208ENST00000583344 M0QZ58 72 aa1.75□□□□□ -2.13
SMCHD1-208ENST00000583344 RNF213Q63HN8 5207 aa1.75□□□□□ -2.13
SMCHD1-208ENST00000583344 KRTAP12-1P59990 96 aa1.74□□□□□ -2.13
SMCHD1-208ENST00000583344 A0A0D9SG42 100 aa1.72□□□□□ -2.13
SMCHD1-208ENST00000583344 TNXBP22105 4242 aa1.72□□□□□ -2.13
SMCHD1-208ENST00000583344 FLG2Q5D862 2391 aaPredicted RBP1.7□□□□□ -2.14
SMCHD1-208ENST00000583344 C10orf95Q9H7T3 257 aa1.7□□□□□ -2.14
SMCHD1-208ENST00000583344 MT1HL1P0DM35 61 aa1.68□□□□□ -2.14
SMCHD1-208ENST00000583344 FAT4Q6V0I7 4981 aa1.67□□□□□ -2.14
SMCHD1-208ENST00000583344 KRTAP6-3Q3LI67 103 aa1.67□□□□□ -2.14
SMCHD1-208ENST00000583344 MUC2Q02817 5179 aa1.65□□□□□ -2.15
SMCHD1-208ENST00000583344 LRP2P98164 4655 aa1.64□□□□□ -2.15
SMCHD1-208ENST00000583344 PLAC4Q8WY50 150 aa1.64□□□□□ -2.15
SMCHD1-208ENST00000583344 FCGBPQ9Y6R7 5405 aaPredicted RBP1.62□□□□□ -2.15
SMCHD1-208ENST00000583344 MUC17Q685J3 4493 aa1.61□□□□□ -2.15
SMCHD1-208ENST00000583344 LPAP08519 4548 aa1.61□□□□□ -2.15
SMCHD1-208ENST00000583344 KRTAP19-2Q3LHN2 52 aa1.6□□□□□ -2.15
SMCHD1-208ENST00000583344 INE1O15225 51 aa1.56□□□□□ -2.16
SMCHD1-208ENST00000583344 FSIP2Q5CZC0 6907 aa1.55□□□□□ -2.16
SMCHD1-208ENST00000583344 TNP1P09430 55 aa1.53□□□□□ -2.16
SMCHD1-208ENST00000583344 SPRR2GQ9BYE4 73 aa1.49□□□□□ -2.17
SMCHD1-208ENST00000583344 FLGP20930 4061 aaPredicted RBP1.45□□□□□ -2.18
SMCHD1-208ENST00000583344 M0R2T5 61 aa1.44□□□□□ -2.18
SMCHD1-208ENST00000583344 KRTAP8-1Q8IUC2 63 aa1.44□□□□□ -2.18
SMCHD1-208ENST00000583344 KRTAP19-8Q3LI54 63 aa1.43□□□□□ -2.18
SMCHD1-208ENST00000583344 SSPOA2VEC9 5147 aa1.41□□□□□ -2.18
SMCHD1-208ENST00000583344 USH2AO75445 5202 aa1.4□□□□□ -2.18
SMCHD1-208ENST00000583344 MT1HP80294 61 aa1.4□□□□□ -2.19
SMCHD1-208ENST00000583344 MT2AP02795 61 aa1.38□□□□□ -2.19
SMCHD1-208ENST00000583344 MT1FP04733 61 aa1.37□□□□□ -2.19
SMCHD1-208ENST00000583344 MT1BP07438 61 aa1.37□□□□□ -2.19
SMCHD1-208ENST00000583344 MT1XP80297 61 aa1.37□□□□□ -2.19
SMCHD1-208ENST00000583344 KRTAP20-1Q3LI63 56 aa1.37□□□□□ -2.19
SMCHD1-208ENST00000583344 MACF1Q9UPN3 7388 aaKnown RBP1.36□□□□□ -2.19
SMCHD1-208ENST00000583344 SYNE2Q8WXH0 6885 aaKnown RBP1.35□□□□□ -2.19
SMCHD1-208ENST00000583344 NEBP20929 6669 aa1.3□□□□□ -2.2
SMCHD1-208ENST00000583344 KRTAP2-3P0C7H8 128 aa1.27□□□□□ -2.21
SMCHD1-208ENST00000583344 KRTAP19-5Q3LI72 72 aa1.27□□□□□ -2.21
SMCHD1-208ENST00000583344 KRTAP2-4Q9BYR9 128 aa1.27□□□□□ -2.21
SMCHD1-208ENST00000583344 KRTAP2-1Q9BYU5 128 aa1.27□□□□□ -2.21
SMCHD1-208ENST00000583344 MUC12Q9UKN1 5478 aa1.25□□□□□ -2.21
SMCHD1-208ENST00000583344 KRTAP19-6Q3LI70 58 aa1.25□□□□□ -2.21
SMCHD1-208ENST00000583344 GPR98Q8WXG9 6306 aa1.25□□□□□ -2.21
SMCHD1-208ENST00000583344 KRTAP19-7Q3SYF9 63 aa1.22□□□□□ -2.21
SMCHD1-208ENST00000583344 KMT2DO14686 5537 aa1.21□□□□□ -2.22
SMCHD1-208ENST00000583344 MDN1Q9NU22 5596 aa1.2□□□□□ -2.22
SMCHD1-208ENST00000583344 SPRR2EP22531 72 aa1.2□□□□□ -2.22
SMCHD1-208ENST00000583344 SPRR2BP35325 72 aa1.2□□□□□ -2.22
SMCHD1-208ENST00000583344 SPRR2AP35326 72 aa1.2□□□□□ -2.22
SMCHD1-208ENST00000583344 MT1EP04732 61 aa1.19□□□□□ -2.22
SMCHD1-208ENST00000583344 MT1LQ93083 61 aa1.19□□□□□ -2.22
SMCHD1-208ENST00000583344 SPRR2FQ96RM1 72 aa1.16□□□□□ -2.22
SMCHD1-208ENST00000583344 SPRR2DP22532 72 aa1.15□□□□□ -2.23
SMCHD1-208ENST00000583344 MT1GP13640 62 aa1.13□□□□□ -2.23
SMCHD1-208ENST00000583344 MT1MQ8N339 61 aa1.1□□□□□ -2.23
SMCHD1-208ENST00000583344 MT1AP04731 61 aa1.09□□□□□ -2.23
SMCHD1-208ENST00000583344 KRTAP19-3Q7Z4W3 81 aa1.09□□□□□ -2.23
SMCHD1-208ENST00000583344 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
SMCHD1-208ENST00000583344 AHNAK2Q8IVF2 5795 aa1.07□□□□□ -2.24
SMCHD1-208ENST00000583344 MT4P47944 62 aa1.05□□□□□ -2.24
SMCHD1-208ENST00000583344 DSTQ03001 7570 aaKnown RBP1.04□□□□□ -2.24
SMCHD1-208ENST00000583344 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
SMCHD1-208ENST00000583344 KRTAP6-1Q3LI64 71 aa1□□□□□ -2.25
SMCHD1-208ENST00000583344 AHNAKQ09666 5890 aaKnown RBP0.96□□□□□ -2.26
SMCHD1-208ENST00000583344 PRM1P04553 51 aa0.96□□□□□ -2.26
SMCHD1-208ENST00000583344 SYNE1Q8NF91 8797 aaKnown RBP0.95□□□□□ -2.26
SMCHD1-208ENST00000583344 MUC5BQ9HC84 5762 aaPredicted RBP0.91□□□□□ -2.26
SMCHD1-208ENST00000583344 KRTAP6-2Q3LI66 62 aa0.91□□□□□ -2.26
SMCHD1-208ENST00000583344 MUC5ACP98088 5654 aa0.91□□□□□ -2.26
SMCHD1-208ENST00000583344 KRTAP20-2Q3LI61 65 aa0.88□□□□□ -2.27
SMCHD1-208ENST00000583344 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
SMCHD1-208ENST00000583344 PHGR1C9JFL3 82 aa0.65□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 8.7 ms