RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 KRTAP4-7Q9BYR0 210 aa3.75□□□□□ -1.81
RFFL-209ENST00000581265 SERP1Q9Y6X1 66 aa3.75□□□□□ -1.81
RFFL-209ENST00000581265 KRTAP5-4Q6L8H1 288 aa3.74□□□□□ -1.81
RFFL-209ENST00000581265 COA5Q86WW8 74 aa3.74□□□□□ -1.81
RFFL-209ENST00000581265 KRTAP12-1P59990 96 aa3.73□□□□□ -1.81
RFFL-209ENST00000581265 A0A1B0GU33 70 aa3.72□□□□□ -1.81
RFFL-209ENST00000581265 K7ERU9 68 aa3.72□□□□□ -1.81
RFFL-209ENST00000581265 SERP2Q8N6R1 65 aa3.71□□□□□ -1.82
RFFL-209ENST00000581265 KRTAP4-3Q9BYR4 195 aa3.69□□□□□ -1.82
RFFL-209ENST00000581265 C10orf95Q9H7T3 257 aa3.66□□□□□ -1.82
RFFL-209ENST00000581265 LCE3AQ5TA76 89 aa3.64□□□□□ -1.83
RFFL-209ENST00000581265 SMIM26A0A096LP01 95 aa3.61□□□□□ -1.83
RFFL-209ENST00000581265 TNP1P09430 55 aa3.61□□□□□ -1.83
RFFL-209ENST00000581265 A8MU10 97 aa3.57□□□□□ -1.84
RFFL-209ENST00000581265 KRTAP20-2Q3LI61 65 aa3.57□□□□□ -1.84
RFFL-209ENST00000581265 KRTAP4-2Q9BYR5 136 aa3.57□□□□□ -1.84
RFFL-209ENST00000581265 KRTAP4-11Q9BYQ6 195 aa3.56□□□□□ -1.84
RFFL-209ENST00000581265 A0A1B0GU69 56 aa3.55□□□□□ -1.84
RFFL-209ENST00000581265 V9GYY9 64 aa3.55□□□□□ -1.84
RFFL-209ENST00000581265 H7BZZ5 65 aa3.54□□□□□ -1.84
RFFL-209ENST00000581265 COX7CP15954 63 aa3.53□□□□□ -1.84
RFFL-209ENST00000581265 KRTAP12-3P60328 96 aa3.52□□□□□ -1.85
RFFL-209ENST00000581265 AHNAKQ09666 5890 aaKnown RBP3.51□□□□□ -1.85
RFFL-209ENST00000581265 KRTAP5-5Q701N2 237 aaPredicted RBP3.5□□□□□ -1.85
RFFL-209ENST00000581265 KRTAP12-4P60329 112 aa3.47□□□□□ -1.85
RFFL-209ENST00000581265 PRAC1Q96KF2 57 aa3.43□□□□□ -1.86
RFFL-209ENST00000581265 MUC5ACP98088 5654 aa3.4□□□□□ -1.86
RFFL-209ENST00000581265 PRR15LQ9BU68 103 aa3.38□□□□□ -1.87
RFFL-209ENST00000581265 SYNE1Q8NF91 8797 aaKnown RBP3.34□□□□□ -1.87
RFFL-209ENST00000581265 ANAPC13Q9BS18 74 aa3.34□□□□□ -1.87
RFFL-209ENST00000581265 MUC5BQ9HC84 5762 aaPredicted RBP3.34□□□□□ -1.88
RFFL-209ENST00000581265 CCDC179H3BU77 68 aa3.33□□□□□ -1.88
RFFL-209ENST00000581265 KRTAP25-1Q3LHN0 102 aa3.32□□□□□ -1.88
RFFL-209ENST00000581265 LINC01558Q9Y6Z2 57 aa3.32□□□□□ -1.88
RFFL-209ENST00000581265 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
RFFL-209ENST00000581265 UQCR11O14957 56 aa3.28□□□□□ -1.88
RFFL-209ENST00000581265 ATP5EP56381 51 aaPredicted RBP3.26□□□□□ -1.89
RFFL-209ENST00000581265 KRTAP15-1Q3LI76 137 aa3.23□□□□□ -1.89
RFFL-209ENST00000581265 LCE3CQ5T5A8 94 aa3.23□□□□□ -1.89
RFFL-209ENST00000581265 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
RFFL-209ENST00000581265 MT1AP04731 61 aa3.19□□□□□ -1.9
RFFL-209ENST00000581265 MIR22HGQ0VDD5 57 aa3.18□□□□□ -1.9
RFFL-209ENST00000581265 KRTAP6-1Q3LI64 71 aa3.18□□□□□ -1.9
RFFL-209ENST00000581265 K7ERS5 55 aa3.16□□□□□ -1.9
RFFL-209ENST00000581265 PRO0628Q9UI54 55 aa3.14□□□□□ -1.91
RFFL-209ENST00000581265 PSPHP1O15172 72 aa3.12□□□□□ -1.91
RFFL-209ENST00000581265 TMEM258P61165 79 aa3.12□□□□□ -1.91
RFFL-209ENST00000581265 KRTAP6-2Q3LI66 62 aa3.08□□□□□ -1.92
RFFL-209ENST00000581265 OBSCNQ5VST9 7968 aa3.05□□□□□ -1.92
RFFL-209ENST00000581265 KRTAP9-6A8MVA2 160 aa3.05□□□□□ -1.92
RFFL-209ENST00000581265 PMAIP1Q13794 54 aa3.05□□□□□ -1.92
RFFL-209ENST00000581265 Q1T7F1 81 aa2.98□□□□□ -1.93
RFFL-209ENST00000581265 NDUFAF8A1L188 74 aa2.96□□□□□ -1.94
RFFL-209ENST00000581265 RPS28P62857 69 aaKnown RBP2.96□□□□□ -1.94
RFFL-209ENST00000581265 CDC42SE1Q9NRR8 79 aa2.96□□□□□ -1.94
RFFL-209ENST00000581265 MT3P25713 68 aa2.94□□□□□ -1.94
RFFL-209ENST00000581265 KRTAP5-1Q6L8H4 278 aa2.94□□□□□ -1.94
RFFL-209ENST00000581265 ROMO1P60602 79 aa2.91□□□□□ -1.94
RFFL-209ENST00000581265 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
RFFL-209ENST00000581265 A6NED7 52 aa2.88□□□□□ -1.95
RFFL-209ENST00000581265 KTN1-AS1Q86SY8 53 aa2.78□□□□□ -1.96
RFFL-209ENST00000581265 LCE1EQ5T753 118 aa2.76□□□□□ -1.97
RFFL-209ENST00000581265 BRK1Q8WUW1 75 aa2.68□□□□□ -1.98
RFFL-209ENST00000581265 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
RFFL-209ENST00000581265 LCE1CQ5T751 118 aa2.56□□□□□ -2
RFFL-209ENST00000581265 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
RFFL-209ENST00000581265 LCE1FQ5T754 118 aa2.39□□□□□ -2.03
RFFL-209ENST00000581265 KRTAP5-11Q6L8G4 156 aa2.38□□□□□ -2.03
RFFL-209ENST00000581265 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.36□□□□□ -2.03
RFFL-209ENST00000581265 LCE3DQ9BYE3 92 aa2.29□□□□□ -2.04
RFFL-209ENST00000581265 LCE3EQ5T5B0 92 aa2.12□□□□□ -2.07
RFFL-209ENST00000581265 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
RFFL-209ENST00000581265 INE1O15225 51 aa2.03□□□□□ -2.08
RFFL-209ENST00000581265 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
RFFL-209ENST00000581265 MUC19Q7Z5P9 8384 aa1.91□□□□□ -2.1
RFFL-209ENST00000581265 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.11
RFFL-209ENST00000581265 PRM1P04553 51 aa1.46□□□□□ -2.18
RFFL-209ENST00000581265 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 87.3 ms