RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PRO2289Q9P1D8 64 aa4.27□□□□□ -1.73
SS18-217ENST00000580958 KRTAP19-6Q3LI70 58 aa4.19□□□□□ -1.74
SS18-217ENST00000580958 LCE1EQ5T753 118 aa4.17□□□□□ -1.74
SS18-217ENST00000580958 PP632Q6XCG6 107 aa4.16□□□□□ -1.74
SS18-217ENST00000580958 KRTAP10-12P60413 245 aa4.14□□□□□ -1.75
SS18-217ENST00000580958 LCE3AQ5TA76 89 aa4.14□□□□□ -1.75
SS18-217ENST00000580958 FSIP2Q5CZC0 6907 aa4.11□□□□□ -1.75
SS18-217ENST00000580958 FCGBPQ9Y6R7 5405 aaPredicted RBP4.06□□□□□ -1.76
SS18-217ENST00000580958 MT3P25713 68 aa4.04□□□□□ -1.76
SS18-217ENST00000580958 KMT2DO14686 5537 aa4.03□□□□□ -1.76
SS18-217ENST00000580958 KRTAP8-1Q8IUC2 63 aa4.03□□□□□ -1.76
SS18-217ENST00000580958 CRCT1Q9UGL9 99 aa3.99□□□□□ -1.77
SS18-217ENST00000580958 KRTAP12-3P60328 96 aa3.96□□□□□ -1.78
SS18-217ENST00000580958 KRTAP19-5Q3LI72 72 aa3.95□□□□□ -1.78
SS18-217ENST00000580958 KRTAP19-7Q3SYF9 63 aa3.88□□□□□ -1.79
SS18-217ENST00000580958 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
SS18-217ENST00000580958 MACF1Q9UPN3 7388 aaKnown RBP3.85□□□□□ -1.79
SS18-217ENST00000580958 MT1EP04732 61 aa3.82□□□□□ -1.8
SS18-217ENST00000580958 KRTAP5-1Q6L8H4 278 aa3.78□□□□□ -1.8
SS18-217ENST00000580958 MT1LQ93083 61 aa3.74□□□□□ -1.81
SS18-217ENST00000580958 SPRR2FQ96RM1 72 aa3.74□□□□□ -1.81
SS18-217ENST00000580958 SYNE2Q8WXH0 6885 aaKnown RBP3.72□□□□□ -1.81
SS18-217ENST00000580958 MUC12Q9UKN1 5478 aa3.72□□□□□ -1.81
SS18-217ENST00000580958 SPRR5A0A1B0GTR4 108 aa3.7□□□□□ -1.82
SS18-217ENST00000580958 LCE3CQ5T5A8 94 aa3.69□□□□□ -1.82
SS18-217ENST00000580958 KRTAP5-4Q6L8H1 288 aa3.67□□□□□ -1.82
SS18-217ENST00000580958 KRTAP5-9P26371 169 aa3.66□□□□□ -1.82
SS18-217ENST00000580958 KRTAP19-3Q7Z4W3 81 aa3.65□□□□□ -1.83
SS18-217ENST00000580958 MT1GP13640 62 aa3.62□□□□□ -1.83
SS18-217ENST00000580958 KRTAP6-3Q3LI67 103 aa3.61□□□□□ -1.83
SS18-217ENST00000580958 MT1MQ8N339 61 aa3.61□□□□□ -1.83
SS18-217ENST00000580958 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
SS18-217ENST00000580958 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
SS18-217ENST00000580958 LUZP6Q538Z0 58 aa3.57□□□□□ -1.84
SS18-217ENST00000580958 MDN1Q9NU22 5596 aa3.57□□□□□ -1.84
SS18-217ENST00000580958 SPRR2EP22531 72 aa3.55□□□□□ -1.84
SS18-217ENST00000580958 SPRR2BP35325 72 aa3.55□□□□□ -1.84
SS18-217ENST00000580958 SPRR2AP35326 72 aa3.55□□□□□ -1.84
SS18-217ENST00000580958 KRTAP4-3Q9BYR4 195 aa3.55□□□□□ -1.84
SS18-217ENST00000580958 NDUFAF8A1L188 74 aa3.52□□□□□ -1.85
SS18-217ENST00000580958 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
SS18-217ENST00000580958 NEBP20929 6669 aa3.44□□□□□ -1.86
SS18-217ENST00000580958 SPRR2DP22532 72 aa3.42□□□□□ -1.86
SS18-217ENST00000580958 DSTQ03001 7570 aaKnown RBP3.38□□□□□ -1.87
SS18-217ENST00000580958 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
SS18-217ENST00000580958 KRTAP2-3P0C7H8 128 aa3.23□□□□□ -1.89
SS18-217ENST00000580958 KRTAP2-4Q9BYR9 128 aa3.23□□□□□ -1.89
SS18-217ENST00000580958 KRTAP2-1Q9BYU5 128 aa3.23□□□□□ -1.89
SS18-217ENST00000580958 KRTAP5-5Q701N2 237 aaPredicted RBP3.22□□□□□ -1.89
SS18-217ENST00000580958 SYNE1Q8NF91 8797 aaKnown RBP3.2□□□□□ -1.9
SS18-217ENST00000580958 MT1AP04731 61 aa3.19□□□□□ -1.9
SS18-217ENST00000580958 KRTAP6-1Q3LI64 71 aa3.16□□□□□ -1.9
SS18-217ENST00000580958 KRTAP20-1Q3LI63 56 aa3.11□□□□□ -1.91
SS18-217ENST00000580958 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
SS18-217ENST00000580958 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
SS18-217ENST00000580958 KRTAP12-4P60329 112 aa2.98□□□□□ -1.93
SS18-217ENST00000580958 MT4P47944 62 aa2.97□□□□□ -1.93
SS18-217ENST00000580958 KRTAP6-2Q3LI66 62 aa2.9□□□□□ -1.95
SS18-217ENST00000580958 HMCN1Q96RW7 5635 aa2.9□□□□□ -1.95
SS18-217ENST00000580958 KRTAP20-2Q3LI61 65 aa2.89□□□□□ -1.95
SS18-217ENST00000580958 INE1O15225 51 aa2.88□□□□□ -1.95
SS18-217ENST00000580958 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
SS18-217ENST00000580958 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
SS18-217ENST00000580958 LCE1BQ5T7P3 118 aa2.71□□□□□ -1.98
SS18-217ENST00000580958 AHNAK2Q8IVF2 5795 aa2.66□□□□□ -1.98
SS18-217ENST00000580958 KRTAP5-8O75690 187 aa2.56□□□□□ -2
SS18-217ENST00000580958 MUC5ACP98088 5654 aa2.45□□□□□ -2.02
SS18-217ENST00000580958 KRTAP5-10Q6L8G5 202 aa2.4□□□□□ -2.03
SS18-217ENST00000580958 GPR98Q8WXG9 6306 aa2.39□□□□□ -2.03
SS18-217ENST00000580958 PRM1P04553 51 aa2.38□□□□□ -2.03
SS18-217ENST00000580958 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
SS18-217ENST00000580958 MUC5BQ9HC84 5762 aaPredicted RBP2.22□□□□□ -2.05
SS18-217ENST00000580958 MUC19Q7Z5P9 8384 aa2.18□□□□□ -2.06
SS18-217ENST00000580958 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
SS18-217ENST00000580958 AHNAKQ09666 5890 aaKnown RBP2.05□□□□□ -2.08
SS18-217ENST00000580958 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
SS18-217ENST00000580958 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
SS18-217ENST00000580958 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 345.9 ms