RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 PP632Q6XCG6 107 aa5.97□□□□□ -1.45
SS18-216ENST00000580751 KTN1-AS1Q86SY8 53 aa5.96□□□□□ -1.46
SS18-216ENST00000580751 LCE1DQ5T752 114 aa5.94□□□□□ -1.46
SS18-216ENST00000580751 LCE4AQ5TA78 99 aa5.92□□□□□ -1.46
SS18-216ENST00000580751 MDN1Q9NU22 5596 aa5.89□□□□□ -1.47
SS18-216ENST00000580751 KRTAP20-1Q3LI63 56 aa5.87□□□□□ -1.47
SS18-216ENST00000580751 LCE3AQ5TA76 89 aa5.85□□□□□ -1.47
SS18-216ENST00000580751 SPRR2EP22531 72 aa5.84□□□□□ -1.47
SS18-216ENST00000580751 SPRR2BP35325 72 aa5.84□□□□□ -1.47
SS18-216ENST00000580751 SPRR2AP35326 72 aa5.84□□□□□ -1.47
SS18-216ENST00000580751 KRTAP4-7Q9BYR0 210 aa5.84□□□□□ -1.47
SS18-216ENST00000580751 LCE1AQ5T7P2 110 aa5.8□□□□□ -1.48
SS18-216ENST00000580751 KRTAP19-7Q3SYF9 63 aa5.79□□□□□ -1.48
SS18-216ENST00000580751 PRAC1Q96KF2 57 aa5.77□□□□□ -1.49
SS18-216ENST00000580751 KRTAP4-9Q9BYQ8 210 aa5.75□□□□□ -1.49
SS18-216ENST00000580751 MT1EP04732 61 aa5.74□□□□□ -1.49
SS18-216ENST00000580751 KRTAP19-5Q3LI72 72 aa5.74□□□□□ -1.49
SS18-216ENST00000580751 KRTAP12-3P60328 96 aa5.69□□□□□ -1.5
SS18-216ENST00000580751 SPRR2DP22532 72 aa5.64□□□□□ -1.51
SS18-216ENST00000580751 KRTAP19-3Q7Z4W3 81 aa5.62□□□□□ -1.51
SS18-216ENST00000580751 LCE5AQ5TCM9 118 aa5.6□□□□□ -1.51
SS18-216ENST00000580751 KRTAP2-3P0C7H8 128 aa5.59□□□□□ -1.51
SS18-216ENST00000580751 KRTAP2-4Q9BYR9 128 aa5.59□□□□□ -1.51
SS18-216ENST00000580751 KRTAP4-2Q9BYR5 136 aa5.58□□□□□ -1.52
SS18-216ENST00000580751 KRTAP4-11Q9BYQ6 195 aa5.57□□□□□ -1.52
SS18-216ENST00000580751 KRTAP15-1Q3LI76 137 aa5.54□□□□□ -1.52
SS18-216ENST00000580751 MT1LQ93083 61 aa5.54□□□□□ -1.52
SS18-216ENST00000580751 MT1GP13640 62 aa5.53□□□□□ -1.52
SS18-216ENST00000580751 MT1MQ8N339 61 aa5.43□□□□□ -1.54
SS18-216ENST00000580751 KRTAP2-2Q9BYT5 123 aa5.41□□□□□ -1.54
SS18-216ENST00000580751 KRTAP2-1Q9BYU5 128 aa5.41□□□□□ -1.54
SS18-216ENST00000580751 DSTQ03001 7570 aaKnown RBP5.36□□□□□ -1.55
SS18-216ENST00000580751 LCE3CQ5T5A8 94 aa5.3□□□□□ -1.56
SS18-216ENST00000580751 KRTAP4-3Q9BYR4 195 aa5.26□□□□□ -1.57
SS18-216ENST00000580751 GPR98Q8WXG9 6306 aa5.25□□□□□ -1.57
SS18-216ENST00000580751 SPRR5A0A1B0GTR4 108 aa5.15□□□□□ -1.59
SS18-216ENST00000580751 KRTAP5-4Q6L8H1 288 aa4.98□□□□□ -1.61
SS18-216ENST00000580751 KRTAP5-5Q701N2 237 aaPredicted RBP4.95□□□□□ -1.62
SS18-216ENST00000580751 KRTAP9-6A8MVA2 160 aa4.92□□□□□ -1.62
SS18-216ENST00000580751 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
SS18-216ENST00000580751 MT4P47944 62 aa4.89□□□□□ -1.63
SS18-216ENST00000580751 HMCN1Q96RW7 5635 aa4.87□□□□□ -1.63
SS18-216ENST00000580751 KRTAP5-3Q6L8H2 238 aa4.84□□□□□ -1.63
SS18-216ENST00000580751 KRTAP12-4P60329 112 aa4.76□□□□□ -1.65
SS18-216ENST00000580751 MT1AP04731 61 aa4.73□□□□□ -1.65
SS18-216ENST00000580751 SYNE1Q8NF91 8797 aaKnown RBP4.72□□□□□ -1.65
SS18-216ENST00000580751 AHNAK2Q8IVF2 5795 aa4.69□□□□□ -1.66
SS18-216ENST00000580751 KRTAP20-2Q3LI61 65 aa4.67□□□□□ -1.66
SS18-216ENST00000580751 A0A0A0MQY5 61 aa4.65□□□□□ -1.67
SS18-216ENST00000580751 KRTAP6-1Q3LI64 71 aa4.65□□□□□ -1.67
SS18-216ENST00000580751 KRTAP5-10Q6L8G5 202 aa4.6□□□□□ -1.67
SS18-216ENST00000580751 NDUFAF8A1L188 74 aa4.52□□□□□ -1.69
SS18-216ENST00000580751 KRTAP5-7Q6L8G8 165 aa4.47□□□□□ -1.69
SS18-216ENST00000580751 KRTAP5-2Q701N4 177 aa4.42□□□□□ -1.7
SS18-216ENST00000580751 KRTAP6-2Q3LI66 62 aa4.39□□□□□ -1.71
SS18-216ENST00000580751 MT3P25713 68 aa4.31□□□□□ -1.72
SS18-216ENST00000580751 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
SS18-216ENST00000580751 KRTAP5-8O75690 187 aa4.02□□□□□ -1.77
SS18-216ENST00000580751 AHNAKQ09666 5890 aaKnown RBP4□□□□□ -1.77
SS18-216ENST00000580751 LCE3DQ9BYE3 92 aa3.96□□□□□ -1.78
SS18-216ENST00000580751 MUC5ACP98088 5654 aa3.94□□□□□ -1.78
SS18-216ENST00000580751 MUC5BQ9HC84 5762 aaPredicted RBP3.89□□□□□ -1.79
SS18-216ENST00000580751 LCE1EQ5T753 118 aa3.89□□□□□ -1.79
SS18-216ENST00000580751 KRTAP5-1Q6L8H4 278 aa3.89□□□□□ -1.79
SS18-216ENST00000580751 INE1O15225 51 aa3.87□□□□□ -1.79
SS18-216ENST00000580751 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.79
SS18-216ENST00000580751 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
SS18-216ENST00000580751 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.68□□□□□ -1.82
SS18-216ENST00000580751 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
SS18-216ENST00000580751 LCE1CQ5T751 118 aa3.6□□□□□ -1.83
SS18-216ENST00000580751 LCE1FQ5T754 118 aa3.43□□□□□ -1.86
SS18-216ENST00000580751 PRM1P04553 51 aa3.19□□□□□ -1.9
SS18-216ENST00000580751 KRTAP21-2Q3LI59 83 aa3.06□□□□□ -1.92
SS18-216ENST00000580751 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
SS18-216ENST00000580751 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
SS18-216ENST00000580751 MUC19Q7Z5P9 8384 aa2.5□□□□□ -2.01
SS18-216ENST00000580751 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
SS18-216ENST00000580751 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 106.9 ms