RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 MUC5ACP98088 5654 aa4.79□□□□□ -1.64
CIITA-211ENST00000576601 MUC5BQ9HC84 5762 aaPredicted RBP4.78□□□□□ -1.64
CIITA-211ENST00000576601 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
CIITA-211ENST00000576601 C10orf95Q9H7T3 257 aa4.76□□□□□ -1.65
CIITA-211ENST00000576601 A8MU10 97 aa4.73□□□□□ -1.65
CIITA-211ENST00000576601 SYNE1Q8NF91 8797 aaKnown RBP4.72□□□□□ -1.65
CIITA-211ENST00000576601 H7BZZ5 65 aa4.68□□□□□ -1.66
CIITA-211ENST00000576601 KRTAP4-7Q9BYR0 210 aa4.67□□□□□ -1.66
CIITA-211ENST00000576601 COX7CP15954 63 aa4.65□□□□□ -1.67
CIITA-211ENST00000576601 SMIM26A0A096LP01 95 aa4.63□□□□□ -1.67
CIITA-211ENST00000576601 KRTAP5-5Q701N2 237 aaPredicted RBP4.63□□□□□ -1.67
CIITA-211ENST00000576601 A0A1B0GU69 56 aa4.62□□□□□ -1.67
CIITA-211ENST00000576601 TNP1P09430 55 aa4.62□□□□□ -1.67
CIITA-211ENST00000576601 ANAPC13Q9BS18 74 aa4.62□□□□□ -1.67
CIITA-211ENST00000576601 KRTAP4-11Q9BYQ6 195 aa4.55□□□□□ -1.68
CIITA-211ENST00000576601 KRTAP12-3P60328 96 aa4.54□□□□□ -1.68
CIITA-211ENST00000576601 KRTAP12-4P60329 112 aa4.53□□□□□ -1.68
CIITA-211ENST00000576601 CCDC179H3BU77 68 aa4.5□□□□□ -1.69
CIITA-211ENST00000576601 KRTAP5-8O75690 187 aa4.47□□□□□ -1.69
CIITA-211ENST00000576601 OBSCNQ5VST9 7968 aa4.45□□□□□ -1.7
CIITA-211ENST00000576601 LOC100996750A0A140TA64 210 aa4.43□□□□□ -1.7
CIITA-211ENST00000576601 ATP5EP56381 51 aaPredicted RBP4.4□□□□□ -1.71
CIITA-211ENST00000576601 KRTAP5-2Q701N4 177 aa4.37□□□□□ -1.71
CIITA-211ENST00000576601 PRR15LQ9BU68 103 aa4.37□□□□□ -1.71
CIITA-211ENST00000576601 TMEM258P61165 79 aa4.35□□□□□ -1.71
CIITA-211ENST00000576601 LINC01558Q9Y6Z2 57 aa4.34□□□□□ -1.71
CIITA-211ENST00000576601 KRTAP25-1Q3LHN0 102 aa4.25□□□□□ -1.73
CIITA-211ENST00000576601 UQCR11O14957 56 aa4.24□□□□□ -1.73
CIITA-211ENST00000576601 KRTAP9-9Q9BYP9 154 aa4.24□□□□□ -1.73
CIITA-211ENST00000576601 PCP4P48539 62 aa4.2□□□□□ -1.74
CIITA-211ENST00000576601 MIR22HGQ0VDD5 57 aa4.16□□□□□ -1.74
CIITA-211ENST00000576601 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
CIITA-211ENST00000576601 KRTAP15-1Q3LI76 137 aa4.15□□□□□ -1.75
CIITA-211ENST00000576601 KRTAP6-1Q3LI64 71 aa4.14□□□□□ -1.75
CIITA-211ENST00000576601 MT1AP04731 61 aa4.11□□□□□ -1.75
CIITA-211ENST00000576601 KRTAP19-4Q3LI73 84 aa4.11□□□□□ -1.75
CIITA-211ENST00000576601 V9GYY9 64 aa4.1□□□□□ -1.75
CIITA-211ENST00000576601 Q1T7F1 81 aa4.06□□□□□ -1.76
CIITA-211ENST00000576601 KRTAP23-1A1A580 65 aa4.04□□□□□ -1.76
CIITA-211ENST00000576601 K7ERS5 55 aa4.04□□□□□ -1.76
CIITA-211ENST00000576601 PSPHP1O15172 72 aa4.04□□□□□ -1.76
CIITA-211ENST00000576601 RPS28P62857 69 aaKnown RBP4.04□□□□□ -1.76
CIITA-211ENST00000576601 KRTAP5-1Q6L8H4 278 aa4.03□□□□□ -1.76
CIITA-211ENST00000576601 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
CIITA-211ENST00000576601 KRTAP6-2Q3LI66 62 aa4.02□□□□□ -1.77
CIITA-211ENST00000576601 KRTAP9-4Q9BYQ2 154 aa3.98□□□□□ -1.77
CIITA-211ENST00000576601 A6NED7 52 aa3.92□□□□□ -1.78
CIITA-211ENST00000576601 CDC42SE1Q9NRR8 79 aa3.86□□□□□ -1.79
CIITA-211ENST00000576601 ROMO1P60602 79 aa3.79□□□□□ -1.8
CIITA-211ENST00000576601 MT3P25713 68 aa3.72□□□□□ -1.81
CIITA-211ENST00000576601 BRK1Q8WUW1 75 aa3.6□□□□□ -1.83
CIITA-211ENST00000576601 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
CIITA-211ENST00000576601 KRTAP4-2Q9BYR5 136 aa3.5□□□□□ -1.85
CIITA-211ENST00000576601 KRTAP4-12Q9BQ66 201 aa3.43□□□□□ -1.86
CIITA-211ENST00000576601 PMAIP1Q13794 54 aa3.4□□□□□ -1.87
CIITA-211ENST00000576601 LCE1BQ5T7P3 118 aa3.39□□□□□ -1.87
CIITA-211ENST00000576601 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
CIITA-211ENST00000576601 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
CIITA-211ENST00000576601 KRTAP5-11Q6L8G4 156 aa3.24□□□□□ -1.89
CIITA-211ENST00000576601 PRAC1Q96KF2 57 aa3.21□□□□□ -1.9
CIITA-211ENST00000576601 PHGR1C9JFL3 82 aa3.15□□□□□ -1.91
CIITA-211ENST00000576601 KTN1-AS1Q86SY8 53 aa3.12□□□□□ -1.91
CIITA-211ENST00000576601 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
CIITA-211ENST00000576601 SVIPQ8NHG7 77 aa3□□□□□ -1.93
CIITA-211ENST00000576601 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.97□□□□□ -1.93
CIITA-211ENST00000576601 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
CIITA-211ENST00000576601 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
CIITA-211ENST00000576601 KRTAP21-2Q3LI59 83 aa2.73□□□□□ -1.97
CIITA-211ENST00000576601 LUZP6Q538Z0 58 aa2.73□□□□□ -1.97
CIITA-211ENST00000576601 LCE3EQ5T5B0 92 aa2.71□□□□□ -1.98
CIITA-211ENST00000576601 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
CIITA-211ENST00000576601 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
CIITA-211ENST00000576601 NDUFAF8A1L188 74 aa2.36□□□□□ -2.03
CIITA-211ENST00000576601 A0A0A0MQY5 61 aa2□□□□□ -2.09
CIITA-211ENST00000576601 PRM1P04553 51 aa1.98□□□□□ -2.09
CIITA-211ENST00000576601 INE1O15225 51 aa1.94□□□□□ -2.1
CIITA-211ENST00000576601 MUC16Q8WXI7 14507 aa1.89□□□□□ -2.11
CIITA-211ENST00000576601 H3BS24 57 aa1.84□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 51.9 ms