RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 PP632Q6XCG6 107 aa4.46□□□□□ -1.7
CCDC40-210ENST00000573903 MIR22HGQ0VDD5 57 aa4.45□□□□□ -1.7
CCDC40-210ENST00000573903 A6NED7 52 aa4.44□□□□□ -1.7
CCDC40-210ENST00000573903 MT1GP13640 62 aa4.44□□□□□ -1.7
CCDC40-210ENST00000573903 TNP1P09430 55 aa4.43□□□□□ -1.7
CCDC40-210ENST00000573903 LCE1DQ5T752 114 aa4.43□□□□□ -1.7
CCDC40-210ENST00000573903 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
CCDC40-210ENST00000573903 C10orf95Q9H7T3 257 aa4.41□□□□□ -1.7
CCDC40-210ENST00000573903 K7ERS5 55 aa4.4□□□□□ -1.71
CCDC40-210ENST00000573903 LCE4AQ5TA78 99 aa4.4□□□□□ -1.71
CCDC40-210ENST00000573903 MT4P47944 62 aa4.38□□□□□ -1.71
CCDC40-210ENST00000573903 CDC42SE1Q9NRR8 79 aa4.37□□□□□ -1.71
CCDC40-210ENST00000573903 MT1MQ8N339 61 aa4.34□□□□□ -1.71
CCDC40-210ENST00000573903 BRK1Q8WUW1 75 aa4.33□□□□□ -1.72
CCDC40-210ENST00000573903 LCE3AQ5TA76 89 aa4.32□□□□□ -1.72
CCDC40-210ENST00000573903 MT1LQ93083 61 aa4.31□□□□□ -1.72
CCDC40-210ENST00000573903 HMCN1Q96RW7 5635 aa4.26□□□□□ -1.73
CCDC40-210ENST00000573903 KRTAP25-1Q3LHN0 102 aa4.26□□□□□ -1.73
CCDC40-210ENST00000573903 KRTAP5-4Q6L8H1 288 aa4.23□□□□□ -1.73
CCDC40-210ENST00000573903 KRTAP4-3Q9BYR4 195 aa4.22□□□□□ -1.73
CCDC40-210ENST00000573903 PRO0628Q9UI54 55 aa4.22□□□□□ -1.73
CCDC40-210ENST00000573903 KRTAP5-10Q6L8G5 202 aa4.2□□□□□ -1.74
CCDC40-210ENST00000573903 AHNAK2Q8IVF2 5795 aa4.18□□□□□ -1.74
CCDC40-210ENST00000573903 KRTAP12-3P60328 96 aa4.16□□□□□ -1.74
CCDC40-210ENST00000573903 PMAIP1Q13794 54 aa4.1□□□□□ -1.75
CCDC40-210ENST00000573903 KRTAP23-1A1A580 65 aa4.09□□□□□ -1.75
CCDC40-210ENST00000573903 ROMO1P60602 79 aa4.07□□□□□ -1.76
CCDC40-210ENST00000573903 KRTAP5-7Q6L8G8 165 aa4.07□□□□□ -1.76
CCDC40-210ENST00000573903 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
CCDC40-210ENST00000573903 KRTAP4-7Q9BYR0 210 aa4.06□□□□□ -1.76
CCDC40-210ENST00000573903 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
CCDC40-210ENST00000573903 SPRR5A0A1B0GTR4 108 aa4□□□□□ -1.77
CCDC40-210ENST00000573903 SVIPQ8NHG7 77 aa4□□□□□ -1.77
CCDC40-210ENST00000573903 KRTAP12-4P60329 112 aa3.99□□□□□ -1.77
CCDC40-210ENST00000573903 KRTAP19-4Q3LI73 84 aa3.97□□□□□ -1.77
CCDC40-210ENST00000573903 KRTAP5-5Q701N2 237 aaPredicted RBP3.97□□□□□ -1.77
CCDC40-210ENST00000573903 KRTAP9-9Q9BYP9 154 aa3.95□□□□□ -1.78
CCDC40-210ENST00000573903 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
CCDC40-210ENST00000573903 KRTAP15-1Q3LI76 137 aa3.94□□□□□ -1.78
CCDC40-210ENST00000573903 KTN1-AS1Q86SY8 53 aa3.92□□□□□ -1.78
CCDC40-210ENST00000573903 KRTAP4-12Q9BQ66 201 aa3.91□□□□□ -1.78
CCDC40-210ENST00000573903 LCE3CQ5T5A8 94 aa3.84□□□□□ -1.79
CCDC40-210ENST00000573903 PRAC1Q96KF2 57 aa3.81□□□□□ -1.8
CCDC40-210ENST00000573903 SYNE1Q8NF91 8797 aaKnown RBP3.81□□□□□ -1.8
CCDC40-210ENST00000573903 KRTAP4-11Q9BYQ6 195 aa3.73□□□□□ -1.81
CCDC40-210ENST00000573903 MT1AP04731 61 aa3.68□□□□□ -1.82
CCDC40-210ENST00000573903 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
CCDC40-210ENST00000573903 KRTAP4-2Q9BYR5 136 aa3.67□□□□□ -1.82
CCDC40-210ENST00000573903 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.83
CCDC40-210ENST00000573903 KRTAP5-8O75690 187 aa3.59□□□□□ -1.83
CCDC40-210ENST00000573903 KRTAP9-6A8MVA2 160 aa3.57□□□□□ -1.84
CCDC40-210ENST00000573903 KRTAP6-2Q3LI66 62 aa3.53□□□□□ -1.84
CCDC40-210ENST00000573903 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
CCDC40-210ENST00000573903 OBSCNQ5VST9 7968 aa3.46□□□□□ -1.86
CCDC40-210ENST00000573903 AHNAKQ09666 5890 aaKnown RBP3.44□□□□□ -1.86
CCDC40-210ENST00000573903 MUC5BQ9HC84 5762 aaPredicted RBP3.43□□□□□ -1.86
CCDC40-210ENST00000573903 MT3P25713 68 aa3.39□□□□□ -1.87
CCDC40-210ENST00000573903 KRTAP5-1Q6L8H4 278 aa3.33□□□□□ -1.88
CCDC40-210ENST00000573903 LUZP6Q538Z0 58 aa3.17□□□□□ -1.9
CCDC40-210ENST00000573903 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
CCDC40-210ENST00000573903 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
CCDC40-210ENST00000573903 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
CCDC40-210ENST00000573903 LCE1CQ5T751 118 aa2.91□□□□□ -1.94
CCDC40-210ENST00000573903 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
CCDC40-210ENST00000573903 H3BS24 57 aa2.73□□□□□ -1.97
CCDC40-210ENST00000573903 A0A0A0MQY5 61 aa2.67□□□□□ -1.98
CCDC40-210ENST00000573903 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
CCDC40-210ENST00000573903 KRTAP5-11Q6L8G4 156 aa2.66□□□□□ -1.98
CCDC40-210ENST00000573903 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
CCDC40-210ENST00000573903 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
CCDC40-210ENST00000573903 INE1O15225 51 aa2.53□□□□□ -2
CCDC40-210ENST00000573903 PHGR1C9JFL3 82 aa2.49□□□□□ -2.01
CCDC40-210ENST00000573903 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
CCDC40-210ENST00000573903 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
CCDC40-210ENST00000573903 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
CCDC40-210ENST00000573903 PRM1P04553 51 aa2.08□□□□□ -2.08
CCDC40-210ENST00000573903 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
CCDC40-210ENST00000573903 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 45.7 ms