RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 KRTAP10-10P60014 251 aa3.06□□□□□ -1.92
NUP88-206ENST00000573169 MACF1Q9UPN3 7388 aaKnown RBP3.05□□□□□ -1.92
NUP88-206ENST00000573169 PP632Q6XCG6 107 aa3.04□□□□□ -1.92
NUP88-206ENST00000573169 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
NUP88-206ENST00000573169 PLAC4Q8WY50 150 aa3.03□□□□□ -1.92
NUP88-206ENST00000573169 SYNE2Q8WXH0 6885 aaKnown RBP3.01□□□□□ -1.93
NUP88-206ENST00000573169 R4GN34 69 aa2.99□□□□□ -1.93
NUP88-206ENST00000573169 KRTAP19-6Q3LI70 58 aa2.96□□□□□ -1.94
NUP88-206ENST00000573169 SPRR5A0A1B0GTR4 108 aa2.93□□□□□ -1.94
NUP88-206ENST00000573169 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
NUP88-206ENST00000573169 KRTAP6-3Q3LI67 103 aa2.88□□□□□ -1.95
NUP88-206ENST00000573169 NEBP20929 6669 aa2.87□□□□□ -1.95
NUP88-206ENST00000573169 LCE1FQ5T754 118 aa2.84□□□□□ -1.95
NUP88-206ENST00000573169 CAMK2N1Q7Z7J9 78 aa2.84□□□□□ -1.95
NUP88-206ENST00000573169 MT1BP07438 61 aa2.82□□□□□ -1.96
NUP88-206ENST00000573169 TNP1P09430 55 aa2.82□□□□□ -1.96
NUP88-206ENST00000573169 KRTAP10-12P60413 245 aa2.8□□□□□ -1.96
NUP88-206ENST00000573169 MUC12Q9UKN1 5478 aa2.8□□□□□ -1.96
NUP88-206ENST00000573169 OBSCNQ5VST9 7968 aa2.79□□□□□ -1.96
NUP88-206ENST00000573169 KRTAP19-8Q3LI54 63 aa2.77□□□□□ -1.97
NUP88-206ENST00000573169 SPRR2GQ9BYE4 73 aa2.76□□□□□ -1.97
NUP88-206ENST00000573169 KRTAP10-5P60370 271 aa2.75□□□□□ -1.97
NUP88-206ENST00000573169 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
NUP88-206ENST00000573169 MDN1Q9NU22 5596 aa2.71□□□□□ -1.98
NUP88-206ENST00000573169 KRTAP20-1Q3LI63 56 aa2.71□□□□□ -1.98
NUP88-206ENST00000573169 KMT2DO14686 5537 aa2.7□□□□□ -1.98
NUP88-206ENST00000573169 KRTAP4-3Q9BYR4 195 aa2.7□□□□□ -1.98
NUP88-206ENST00000573169 PRO2289Q9P1D8 64 aa2.69□□□□□ -1.98
NUP88-206ENST00000573169 INE1O15225 51 aa2.68□□□□□ -1.98
NUP88-206ENST00000573169 LCE3CQ5T5A8 94 aa2.68□□□□□ -1.98
NUP88-206ENST00000573169 KRTAP8-1Q8IUC2 63 aa2.67□□□□□ -1.98
NUP88-206ENST00000573169 MT1XP80297 61 aa2.62□□□□□ -1.99
NUP88-206ENST00000573169 LCE3AQ5TA76 89 aa2.62□□□□□ -1.99
NUP88-206ENST00000573169 SPRR2FQ96RM1 72 aa2.62□□□□□ -1.99
NUP88-206ENST00000573169 KRTAP2-3P0C7H8 128 aa2.61□□□□□ -1.99
NUP88-206ENST00000573169 KRTAP2-4Q9BYR9 128 aa2.61□□□□□ -1.99
NUP88-206ENST00000573169 SPRR2EP22531 72 aa2.6□□□□□ -1.99
NUP88-206ENST00000573169 SPRR2BP35325 72 aa2.6□□□□□ -1.99
NUP88-206ENST00000573169 SPRR2AP35326 72 aa2.6□□□□□ -1.99
NUP88-206ENST00000573169 KRTAP9-6A8MVA2 160 aa2.55□□□□□ -2
NUP88-206ENST00000573169 SPRR2DP22532 72 aa2.52□□□□□ -2.01
NUP88-206ENST00000573169 KRTAP12-3P60328 96 aa2.52□□□□□ -2.01
NUP88-206ENST00000573169 KRTAP2-1Q9BYU5 128 aa2.52□□□□□ -2.01
NUP88-206ENST00000573169 LCE3EQ5T5B0 92 aa2.43□□□□□ -2.02
NUP88-206ENST00000573169 GPR98Q8WXG9 6306 aa2.43□□□□□ -2.02
NUP88-206ENST00000573169 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
NUP88-206ENST00000573169 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
NUP88-206ENST00000573169 KRTAP19-5Q3LI72 72 aa2.34□□□□□ -2.03
NUP88-206ENST00000573169 KRTAP19-7Q3SYF9 63 aa2.34□□□□□ -2.03
NUP88-206ENST00000573169 MT1EP04732 61 aa2.32□□□□□ -2.04
NUP88-206ENST00000573169 KRTAP19-3Q7Z4W3 81 aa2.3□□□□□ -2.04
NUP88-206ENST00000573169 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
NUP88-206ENST00000573169 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
NUP88-206ENST00000573169 MT1GP13640 62 aa2.23□□□□□ -2.05
NUP88-206ENST00000573169 MT4P47944 62 aa2.23□□□□□ -2.05
NUP88-206ENST00000573169 MT1MQ8N339 61 aa2.21□□□□□ -2.06
NUP88-206ENST00000573169 MT1LQ93083 61 aa2.2□□□□□ -2.06
NUP88-206ENST00000573169 KRTAP5-10Q6L8G5 202 aa2.13□□□□□ -2.07
NUP88-206ENST00000573169 KRTAP5-7Q6L8G8 165 aa2.05□□□□□ -2.08
NUP88-206ENST00000573169 KRTAP20-2Q3LI61 65 aa2.04□□□□□ -2.08
NUP88-206ENST00000573169 LCE3DQ9BYE3 92 aa2.04□□□□□ -2.08
NUP88-206ENST00000573169 KRTAP5-5Q701N2 237 aaPredicted RBP2.03□□□□□ -2.08
NUP88-206ENST00000573169 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
NUP88-206ENST00000573169 MT1AP04731 61 aa2□□□□□ -2.09
NUP88-206ENST00000573169 SYNE1Q8NF91 8797 aaKnown RBP2□□□□□ -2.09
NUP88-206ENST00000573169 LCE1CQ5T751 118 aa1.92□□□□□ -2.1
NUP88-206ENST00000573169 LCE1BQ5T7P3 118 aa1.92□□□□□ -2.1
NUP88-206ENST00000573169 AHNAKQ09666 5890 aaKnown RBP1.88□□□□□ -2.11
NUP88-206ENST00000573169 KRTAP6-1Q3LI64 71 aa1.88□□□□□ -2.11
NUP88-206ENST00000573169 MUC5ACP98088 5654 aa1.83□□□□□ -2.12
NUP88-206ENST00000573169 MUC5BQ9HC84 5762 aaPredicted RBP1.81□□□□□ -2.12
NUP88-206ENST00000573169 KRTAP6-2Q3LI66 62 aa1.81□□□□□ -2.12
NUP88-206ENST00000573169 PRM1P04553 51 aa1.79□□□□□ -2.12
NUP88-206ENST00000573169 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
NUP88-206ENST00000573169 KRTAP21-2Q3LI59 83 aa1.44□□□□□ -2.18
NUP88-206ENST00000573169 PHGR1C9JFL3 82 aa1.25□□□□□ -2.21
NUP88-206ENST00000573169 KRTAP21-1Q3LI58 79 aa1.23□□□□□ -2.21
NUP88-206ENST00000573169 MUC16Q8WXI7 14507 aa0.77□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 45 ms