RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 KRTAP8-1Q8IUC2 63 aa3.31□□□□□ -1.88
VPS53-214ENST00000572607 BRK1Q8WUW1 75 aa3.31□□□□□ -1.88
VPS53-214ENST00000572607 SPRR2FQ96RM1 72 aa3.3□□□□□ -1.88
VPS53-214ENST00000572607 GPR98Q8WXG9 6306 aa3.26□□□□□ -1.89
VPS53-214ENST00000572607 CAMK2N1Q7Z7J9 78 aa3.26□□□□□ -1.89
VPS53-214ENST00000572607 H7BZZ5 65 aa3.25□□□□□ -1.89
VPS53-214ENST00000572607 KRTAP13-4Q3LI77 160 aa3.24□□□□□ -1.89
VPS53-214ENST00000572607 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
VPS53-214ENST00000572607 KTN1-AS1Q86SY8 53 aa3.23□□□□□ -1.89
VPS53-214ENST00000572607 A0A1B0GU33 70 aa3.22□□□□□ -1.89
VPS53-214ENST00000572607 CYSTM1Q9H1C7 97 aa3.22□□□□□ -1.89
VPS53-214ENST00000572607 A0A0D9SG42 100 aa3.21□□□□□ -1.9
VPS53-214ENST00000572607 A0A0A0MQY5 61 aa3.2□□□□□ -1.9
VPS53-214ENST00000572607 A0A1B0GU69 56 aa3.19□□□□□ -1.9
VPS53-214ENST00000572607 SPRR2DP22532 72 aa3.19□□□□□ -1.9
VPS53-214ENST00000572607 SPATA8Q6RVD6 105 aa3.18□□□□□ -1.9
VPS53-214ENST00000572607 SPINT4Q6UDR6 99 aa3.18□□□□□ -1.9
VPS53-214ENST00000572607 Q1T7F1 81 aa3.14□□□□□ -1.91
VPS53-214ENST00000572607 PRR15LQ9BU68 103 aa3.13□□□□□ -1.91
VPS53-214ENST00000572607 KRTAP12-1P59990 96 aa3.1□□□□□ -1.91
VPS53-214ENST00000572607 DSTQ03001 7570 aaKnown RBP3.09□□□□□ -1.91
VPS53-214ENST00000572607 A8MU10 97 aa3.06□□□□□ -1.92
VPS53-214ENST00000572607 LCE3CQ5T5A8 94 aa3.06□□□□□ -1.92
VPS53-214ENST00000572607 KRTAP4-3Q9BYR4 195 aa3.04□□□□□ -1.92
VPS53-214ENST00000572607 LINC01558Q9Y6Z2 57 aa3.04□□□□□ -1.92
VPS53-214ENST00000572607 OBSCNQ5VST9 7968 aa3.03□□□□□ -1.92
VPS53-214ENST00000572607 KRTAP19-7Q3SYF9 63 aa3.02□□□□□ -1.93
VPS53-214ENST00000572607 PSPHP1O15172 72 aa3.01□□□□□ -1.93
VPS53-214ENST00000572607 MT1EP04732 61 aa3.01□□□□□ -1.93
VPS53-214ENST00000572607 TNP1P09430 55 aa3□□□□□ -1.93
VPS53-214ENST00000572607 CDC42SE1Q9NRR8 79 aa3□□□□□ -1.93
VPS53-214ENST00000572607 UQCR11O14957 56 aa2.99□□□□□ -1.93
VPS53-214ENST00000572607 KRTAP19-3Q7Z4W3 81 aa2.99□□□□□ -1.93
VPS53-214ENST00000572607 AHNAK2Q8IVF2 5795 aa2.98□□□□□ -1.93
VPS53-214ENST00000572607 KRTAP19-5Q3LI72 72 aa2.97□□□□□ -1.93
VPS53-214ENST00000572607 A6NED7 52 aa2.96□□□□□ -1.94
VPS53-214ENST00000572607 C10orf95Q9H7T3 257 aa2.96□□□□□ -1.94
VPS53-214ENST00000572607 HMCN1Q96RW7 5635 aa2.95□□□□□ -1.94
VPS53-214ENST00000572607 PP632Q6XCG6 107 aa2.94□□□□□ -1.94
VPS53-214ENST00000572607 MIR22HGQ0VDD5 57 aa2.93□□□□□ -1.94
VPS53-214ENST00000572607 K7ERS5 55 aa2.92□□□□□ -1.94
VPS53-214ENST00000572607 MT1GP13640 62 aa2.92□□□□□ -1.94
VPS53-214ENST00000572607 LCE3AQ5TA76 89 aa2.92□□□□□ -1.94
VPS53-214ENST00000572607 KRTAP5-10Q6L8G5 202 aa2.91□□□□□ -1.94
VPS53-214ENST00000572607 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
VPS53-214ENST00000572607 MT1LQ93083 61 aa2.87□□□□□ -1.95
VPS53-214ENST00000572607 MT1MQ8N339 61 aa2.86□□□□□ -1.95
VPS53-214ENST00000572607 KRTAP12-3P60328 96 aa2.84□□□□□ -1.95
VPS53-214ENST00000572607 KRTAP25-1Q3LHN0 102 aa2.84□□□□□ -1.95
VPS53-214ENST00000572607 MT4P47944 62 aa2.83□□□□□ -1.96
VPS53-214ENST00000572607 KRTAP5-7Q6L8G8 165 aa2.82□□□□□ -1.96
VPS53-214ENST00000572607 ROMO1P60602 79 aa2.79□□□□□ -1.96
VPS53-214ENST00000572607 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
VPS53-214ENST00000572607 PRAC1Q96KF2 57 aa2.78□□□□□ -1.96
VPS53-214ENST00000572607 LUZP6Q538Z0 58 aa2.68□□□□□ -1.98
VPS53-214ENST00000572607 KRTAP5-5Q701N2 237 aaPredicted RBP2.66□□□□□ -1.98
VPS53-214ENST00000572607 SPRR5A0A1B0GTR4 108 aa2.62□□□□□ -1.99
VPS53-214ENST00000572607 KRTAP20-2Q3LI61 65 aa2.62□□□□□ -1.99
VPS53-214ENST00000572607 NDUFAF8A1L188 74 aa2.61□□□□□ -1.99
VPS53-214ENST00000572607 KRTAP12-4P60329 112 aa2.59□□□□□ -1.99
VPS53-214ENST00000572607 SYNE1Q8NF91 8797 aaKnown RBP2.56□□□□□ -2
VPS53-214ENST00000572607 LCE1CQ5T751 118 aa2.55□□□□□ -2
VPS53-214ENST00000572607 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
VPS53-214ENST00000572607 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
VPS53-214ENST00000572607 MUC5ACP98088 5654 aa2.46□□□□□ -2.02
VPS53-214ENST00000572607 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
VPS53-214ENST00000572607 MT1AP04731 61 aa2.46□□□□□ -2.02
VPS53-214ENST00000572607 KRTAP6-1Q3LI64 71 aa2.42□□□□□ -2.02
VPS53-214ENST00000572607 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
VPS53-214ENST00000572607 KRTAP6-2Q3LI66 62 aa2.32□□□□□ -2.04
VPS53-214ENST00000572607 INE1O15225 51 aa2.27□□□□□ -2.05
VPS53-214ENST00000572607 LCE3DQ9BYE3 92 aa2.13□□□□□ -2.07
VPS53-214ENST00000572607 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
VPS53-214ENST00000572607 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
VPS53-214ENST00000572607 PHGR1C9JFL3 82 aa1.66□□□□□ -2.14
VPS53-214ENST00000572607 PRM1P04553 51 aa1.36□□□□□ -2.19
VPS53-214ENST00000572607 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
VPS53-214ENST00000572607 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 197 ms