RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 LCE4AQ5TA78 99 aa6.35□□□□□ -1.39
CHD3-214ENST00000572579 C10orf95Q9H7T3 257 aa6.34□□□□□ -1.39
CHD3-214ENST00000572579 AHNAK2Q8IVF2 5795 aa6.33□□□□□ -1.4
CHD3-214ENST00000572579 KRTAP5-4Q6L8H1 288 aa6.29□□□□□ -1.4
CHD3-214ENST00000572579 SMIM26A0A096LP01 95 aa6.28□□□□□ -1.4
CHD3-214ENST00000572579 A0A1B0GU69 56 aa6.28□□□□□ -1.4
CHD3-214ENST00000572579 KRTAP4-6Q9BYQ5 205 aa6.23□□□□□ -1.41
CHD3-214ENST00000572579 TNP1P09430 55 aa6.21□□□□□ -1.42
CHD3-214ENST00000572579 KRTAP4-7Q9BYR0 210 aa6.2□□□□□ -1.42
CHD3-214ENST00000572579 KRTAP5-10Q6L8G5 202 aa6.12□□□□□ -1.43
CHD3-214ENST00000572579 Q1T7F1 81 aa6.1□□□□□ -1.43
CHD3-214ENST00000572579 V9GYY9 64 aa6.1□□□□□ -1.43
CHD3-214ENST00000572579 KRTAP12-3P60328 96 aa6.07□□□□□ -1.44
CHD3-214ENST00000572579 LINC01558Q9Y6Z2 57 aa5.99□□□□□ -1.45
CHD3-214ENST00000572579 KRTAP5-5Q701N2 237 aaPredicted RBP5.98□□□□□ -1.45
CHD3-214ENST00000572579 PRR15LQ9BU68 103 aa5.95□□□□□ -1.46
CHD3-214ENST00000572579 SVIPQ8NHG7 77 aa5.93□□□□□ -1.46
CHD3-214ENST00000572579 SYNE1Q8NF91 8797 aaKnown RBP5.93□□□□□ -1.46
CHD3-214ENST00000572579 KRTAP20-2Q3LI61 65 aa5.92□□□□□ -1.46
CHD3-214ENST00000572579 KRTAP5-3Q6L8H2 238 aa5.92□□□□□ -1.46
CHD3-214ENST00000572579 PSPHP1O15172 72 aa5.89□□□□□ -1.47
CHD3-214ENST00000572579 LOC100996750A0A140TA64 210 aa5.88□□□□□ -1.47
CHD3-214ENST00000572579 KRTAP5-7Q6L8G8 165 aa5.87□□□□□ -1.47
CHD3-214ENST00000572579 PRO0628Q9UI54 55 aa5.87□□□□□ -1.47
CHD3-214ENST00000572579 SPRR5A0A1B0GTR4 108 aa5.83□□□□□ -1.48
CHD3-214ENST00000572579 BRK1Q8WUW1 75 aa5.82□□□□□ -1.48
CHD3-214ENST00000572579 UQCR11O14957 56 aa5.81□□□□□ -1.48
CHD3-214ENST00000572579 KRTAP25-1Q3LHN0 102 aa5.77□□□□□ -1.49
CHD3-214ENST00000572579 A6NED7 52 aa5.74□□□□□ -1.49
CHD3-214ENST00000572579 KRTAP12-4P60329 112 aa5.74□□□□□ -1.49
CHD3-214ENST00000572579 CDC42SE1Q9NRR8 79 aa5.71□□□□□ -1.5
CHD3-214ENST00000572579 MIR22HGQ0VDD5 57 aa5.7□□□□□ -1.5
CHD3-214ENST00000572579 KRTAP19-4Q3LI73 84 aa5.61□□□□□ -1.51
CHD3-214ENST00000572579 KRTAP15-1Q3LI76 137 aa5.61□□□□□ -1.51
CHD3-214ENST00000572579 LCE3CQ5T5A8 94 aa5.59□□□□□ -1.51
CHD3-214ENST00000572579 KRTAP23-1A1A580 65 aa5.55□□□□□ -1.52
CHD3-214ENST00000572579 PMAIP1Q13794 54 aa5.55□□□□□ -1.52
CHD3-214ENST00000572579 K7ERS5 55 aa5.5□□□□□ -1.53
CHD3-214ENST00000572579 KRTAP6-1Q3LI64 71 aa5.49□□□□□ -1.53
CHD3-214ENST00000572579 KRTAP5-2Q701N4 177 aa5.48□□□□□ -1.53
CHD3-214ENST00000572579 MT1AP04731 61 aa5.45□□□□□ -1.54
CHD3-214ENST00000572579 KRTAP4-11Q9BYQ6 195 aa5.45□□□□□ -1.54
CHD3-214ENST00000572579 KRTAP9-6A8MVA2 160 aa5.4□□□□□ -1.54
CHD3-214ENST00000572579 KTN1-AS1Q86SY8 53 aa5.39□□□□□ -1.55
CHD3-214ENST00000572579 KRTAP9-4Q9BYQ2 154 aa5.31□□□□□ -1.56
CHD3-214ENST00000572579 KRTAP5-8O75690 187 aa5.3□□□□□ -1.56
CHD3-214ENST00000572579 AHNAKQ09666 5890 aaKnown RBP5.28□□□□□ -1.56
CHD3-214ENST00000572579 KRTAP6-2Q3LI66 62 aa5.26□□□□□ -1.57
CHD3-214ENST00000572579 OBSCNQ5VST9 7968 aa5.25□□□□□ -1.57
CHD3-214ENST00000572579 MUC5BQ9HC84 5762 aaPredicted RBP5.23□□□□□ -1.57
CHD3-214ENST00000572579 ROMO1P60602 79 aa5.21□□□□□ -1.58
CHD3-214ENST00000572579 MUC5ACP98088 5654 aa5.18□□□□□ -1.58
CHD3-214ENST00000572579 PRAC1Q96KF2 57 aa5.1□□□□□ -1.59
CHD3-214ENST00000572579 MT3P25713 68 aa4.97□□□□□ -1.61
CHD3-214ENST00000572579 KRTAP5-1Q6L8H4 278 aa4.97□□□□□ -1.61
CHD3-214ENST00000572579 KRTAP9-9Q9BYP9 154 aa4.97□□□□□ -1.61
CHD3-214ENST00000572579 KRTAP4-12Q9BQ66 201 aa4.72□□□□□ -1.65
CHD3-214ENST00000572579 LCE1EQ5T753 118 aa4.62□□□□□ -1.67
CHD3-214ENST00000572579 KRTAP4-2Q9BYR5 136 aa4.46□□□□□ -1.7
CHD3-214ENST00000572579 LCE1BQ5T7P3 118 aa4.38□□□□□ -1.71
CHD3-214ENST00000572579 H3BS24 57 aa4.37□□□□□ -1.71
CHD3-214ENST00000572579 LCE1CQ5T751 118 aa4.3□□□□□ -1.72
CHD3-214ENST00000572579 NDUFAF8A1L188 74 aa4.19□□□□□ -1.74
CHD3-214ENST00000572579 LUZP6Q538Z0 58 aa4.19□□□□□ -1.74
CHD3-214ENST00000572579 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
CHD3-214ENST00000572579 KRTAP5-11Q6L8G4 156 aa3.9□□□□□ -1.79
CHD3-214ENST00000572579 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
CHD3-214ENST00000572579 A0A0A0MQY5 61 aa3.82□□□□□ -1.8
CHD3-214ENST00000572579 LCE1FQ5T754 118 aa3.8□□□□□ -1.8
CHD3-214ENST00000572579 LCE3EQ5T5B0 92 aa3.69□□□□□ -1.82
CHD3-214ENST00000572579 KRTAP21-2Q3LI59 83 aa3.64□□□□□ -1.83
CHD3-214ENST00000572579 INE1O15225 51 aa3.57□□□□□ -1.84
CHD3-214ENST00000572579 PHGR1C9JFL3 82 aa3.52□□□□□ -1.85
CHD3-214ENST00000572579 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
CHD3-214ENST00000572579 MUC19Q7Z5P9 8384 aa3.27□□□□□ -1.89
CHD3-214ENST00000572579 PRM1P04553 51 aa2.68□□□□□ -1.98
CHD3-214ENST00000572579 KRTAP21-1Q3LI58 79 aa2.65□□□□□ -1.99
CHD3-214ENST00000572579 MUC16Q8WXI7 14507 aa2.35□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 86.6 ms