RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KRTAP4-3Q9BYR4 195 aa6.34□□□□□ -1.39
CLK3-227ENST00000570296 LINC01558Q9Y6Z2 57 aa6.34□□□□□ -1.39
CLK3-227ENST00000570296 MUC5ACP98088 5654 aa6.34□□□□□ -1.39
CLK3-227ENST00000570296 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
CLK3-227ENST00000570296 MT1LQ93083 61 aa6.29□□□□□ -1.4
CLK3-227ENST00000570296 MUC5BQ9HC84 5762 aaPredicted RBP6.29□□□□□ -1.4
CLK3-227ENST00000570296 KRTAP13-4Q3LI77 160 aa6.27□□□□□ -1.41
CLK3-227ENST00000570296 V9GYY9 64 aa6.27□□□□□ -1.41
CLK3-227ENST00000570296 RPS28P62857 69 aaKnown RBP6.26□□□□□ -1.41
CLK3-227ENST00000570296 SPATA8Q6RVD6 105 aa6.25□□□□□ -1.41
CLK3-227ENST00000570296 SMIM26A0A096LP01 95 aa6.22□□□□□ -1.41
CLK3-227ENST00000570296 A0A0D9SG42 100 aa6.21□□□□□ -1.42
CLK3-227ENST00000570296 CAMK2N1Q7Z7J9 78 aa6.19□□□□□ -1.42
CLK3-227ENST00000570296 Q1T7F1 81 aa6.18□□□□□ -1.42
CLK3-227ENST00000570296 UQCR11O14957 56 aa6.15□□□□□ -1.42
CLK3-227ENST00000570296 KRTAP12-4P60329 112 aa6.15□□□□□ -1.42
CLK3-227ENST00000570296 PSPHP1O15172 72 aa6.12□□□□□ -1.43
CLK3-227ENST00000570296 SPINT4Q6UDR6 99 aa6.12□□□□□ -1.43
CLK3-227ENST00000570296 KRTAP4-11Q9BYQ6 195 aa6.11□□□□□ -1.43
CLK3-227ENST00000570296 A8MU10 97 aa6.08□□□□□ -1.44
CLK3-227ENST00000570296 KRTAP5-5Q701N2 237 aaPredicted RBP6.06□□□□□ -1.44
CLK3-227ENST00000570296 KRTAP12-1P59990 96 aa6.05□□□□□ -1.44
CLK3-227ENST00000570296 MIR22HGQ0VDD5 57 aa6.03□□□□□ -1.44
CLK3-227ENST00000570296 SYNE1Q8NF91 8797 aaKnown RBP6.01□□□□□ -1.45
CLK3-227ENST00000570296 A6NED7 52 aa5.97□□□□□ -1.45
CLK3-227ENST00000570296 KRTAP5-8O75690 187 aa5.97□□□□□ -1.45
CLK3-227ENST00000570296 KRTAP4-7Q9BYR0 210 aa5.95□□□□□ -1.46
CLK3-227ENST00000570296 K7ERS5 55 aa5.93□□□□□ -1.46
CLK3-227ENST00000570296 C10orf95Q9H7T3 257 aa5.84□□□□□ -1.47
CLK3-227ENST00000570296 KRTAP9-9Q9BYP9 154 aa5.8□□□□□ -1.48
CLK3-227ENST00000570296 KRTAP5-2Q701N4 177 aa5.76□□□□□ -1.49
CLK3-227ENST00000570296 CDC42SE1Q9NRR8 79 aa5.76□□□□□ -1.49
CLK3-227ENST00000570296 TNP1P09430 55 aa5.73□□□□□ -1.49
CLK3-227ENST00000570296 LCE3AQ5TA76 89 aa5.72□□□□□ -1.49
CLK3-227ENST00000570296 OBSCNQ5VST9 7968 aa5.65□□□□□ -1.51
CLK3-227ENST00000570296 LOC100996750A0A140TA64 210 aa5.64□□□□□ -1.51
CLK3-227ENST00000570296 SVIPQ8NHG7 77 aa5.6□□□□□ -1.51
CLK3-227ENST00000570296 KRTAP25-1Q3LHN0 102 aa5.58□□□□□ -1.52
CLK3-227ENST00000570296 BRK1Q8WUW1 75 aa5.56□□□□□ -1.52
CLK3-227ENST00000570296 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
CLK3-227ENST00000570296 ROMO1P60602 79 aa5.52□□□□□ -1.53
CLK3-227ENST00000570296 PRO0628Q9UI54 55 aa5.47□□□□□ -1.53
CLK3-227ENST00000570296 KRTAP23-1A1A580 65 aa5.38□□□□□ -1.55
CLK3-227ENST00000570296 KRTAP9-4Q9BYQ2 154 aa5.37□□□□□ -1.55
CLK3-227ENST00000570296 KRTAP6-1Q3LI64 71 aa5.36□□□□□ -1.55
CLK3-227ENST00000570296 MT1AP04731 61 aa5.35□□□□□ -1.55
CLK3-227ENST00000570296 KRTAP5-1Q6L8H4 278 aa5.33□□□□□ -1.56
CLK3-227ENST00000570296 KRTAP6-2Q3LI66 62 aa5.31□□□□□ -1.56
CLK3-227ENST00000570296 PMAIP1Q13794 54 aa5.27□□□□□ -1.57
CLK3-227ENST00000570296 KRTAP19-4Q3LI73 84 aa5.2□□□□□ -1.58
CLK3-227ENST00000570296 KRTAP15-1Q3LI76 137 aa5.11□□□□□ -1.59
CLK3-227ENST00000570296 KTN1-AS1Q86SY8 53 aa5.07□□□□□ -1.6
CLK3-227ENST00000570296 LCE3CQ5T5A8 94 aa4.99□□□□□ -1.61
CLK3-227ENST00000570296 MT3P25713 68 aa4.94□□□□□ -1.62
CLK3-227ENST00000570296 PRAC1Q96KF2 57 aa4.92□□□□□ -1.62
CLK3-227ENST00000570296 LCE1EQ5T753 118 aa4.79□□□□□ -1.64
CLK3-227ENST00000570296 KRTAP9-6A8MVA2 160 aa4.71□□□□□ -1.66
CLK3-227ENST00000570296 KRTAP4-2Q9BYR5 136 aa4.59□□□□□ -1.67
CLK3-227ENST00000570296 LCE1BQ5T7P3 118 aa4.53□□□□□ -1.68
CLK3-227ENST00000570296 KRTAP4-12Q9BQ66 201 aa4.47□□□□□ -1.69
CLK3-227ENST00000570296 LCE1CQ5T751 118 aa4.44□□□□□ -1.7
CLK3-227ENST00000570296 KRTAP5-11Q6L8G4 156 aa4.32□□□□□ -1.72
CLK3-227ENST00000570296 PHGR1C9JFL3 82 aa4.27□□□□□ -1.73
CLK3-227ENST00000570296 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
CLK3-227ENST00000570296 LUZP6Q538Z0 58 aa4.2□□□□□ -1.74
CLK3-227ENST00000570296 H3BS24 57 aa3.98□□□□□ -1.77
CLK3-227ENST00000570296 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.93□□□□□ -1.78
CLK3-227ENST00000570296 NDUFAF8A1L188 74 aa3.89□□□□□ -1.79
CLK3-227ENST00000570296 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
CLK3-227ENST00000570296 MUC19Q7Z5P9 8384 aa3.55□□□□□ -1.84
CLK3-227ENST00000570296 KRTAP21-2Q3LI59 83 aa3.55□□□□□ -1.84
CLK3-227ENST00000570296 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
CLK3-227ENST00000570296 A0A0A0MQY5 61 aa3.42□□□□□ -1.86
CLK3-227ENST00000570296 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
CLK3-227ENST00000570296 KRTAP21-1Q3LI58 79 aa3.29□□□□□ -1.88
CLK3-227ENST00000570296 INE1O15225 51 aa3.27□□□□□ -1.89
CLK3-227ENST00000570296 PRM1P04553 51 aa2.83□□□□□ -1.96
CLK3-227ENST00000570296 MUC16Q8WXI7 14507 aa2.47□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 103.9 ms