RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 ATP5EP56381 51 aaPredicted RBP3.53□□□□□ -1.84
GTF3C1-210ENST00000569394 KRTAP12-1P59990 96 aa3.52□□□□□ -1.85
GTF3C1-210ENST00000569394 LCE1FQ5T754 118 aa3.51□□□□□ -1.85
GTF3C1-210ENST00000569394 SMIM26A0A096LP01 95 aa3.5□□□□□ -1.85
GTF3C1-210ENST00000569394 TMEM258P61165 79 aa3.49□□□□□ -1.85
GTF3C1-210ENST00000569394 PRR15LQ9BU68 103 aa3.49□□□□□ -1.85
GTF3C1-210ENST00000569394 LINC01558Q9Y6Z2 57 aa3.46□□□□□ -1.86
GTF3C1-210ENST00000569394 SPRR2DP22532 72 aa3.45□□□□□ -1.86
GTF3C1-210ENST00000569394 KRTAP5-3Q6L8H2 238 aa3.38□□□□□ -1.87
GTF3C1-210ENST00000569394 C10orf95Q9H7T3 257 aa3.38□□□□□ -1.87
GTF3C1-210ENST00000569394 UQCR11O14957 56 aa3.37□□□□□ -1.87
GTF3C1-210ENST00000569394 PSPHP1O15172 72 aa3.37□□□□□ -1.87
GTF3C1-210ENST00000569394 KRTAP19-7Q3SYF9 63 aa3.36□□□□□ -1.87
GTF3C1-210ENST00000569394 KRTAP19-5Q3LI72 72 aa3.35□□□□□ -1.87
GTF3C1-210ENST00000569394 MT1EP04732 61 aa3.34□□□□□ -1.87
GTF3C1-210ENST00000569394 MIR22HGQ0VDD5 57 aa3.34□□□□□ -1.87
GTF3C1-210ENST00000569394 GPR98Q8WXG9 6306 aa3.33□□□□□ -1.88
GTF3C1-210ENST00000569394 TNP1P09430 55 aa3.33□□□□□ -1.88
GTF3C1-210ENST00000569394 LCE3AQ5TA76 89 aa3.32□□□□□ -1.88
GTF3C1-210ENST00000569394 KRTAP19-3Q7Z4W3 81 aa3.29□□□□□ -1.88
GTF3C1-210ENST00000569394 V9GYY9 64 aa3.28□□□□□ -1.88
GTF3C1-210ENST00000569394 Q1T7F1 81 aa3.27□□□□□ -1.89
GTF3C1-210ENST00000569394 K7ERS5 55 aa3.24□□□□□ -1.89
GTF3C1-210ENST00000569394 LCE3CQ5T5A8 94 aa3.24□□□□□ -1.89
GTF3C1-210ENST00000569394 A6NED7 52 aa3.23□□□□□ -1.89
GTF3C1-210ENST00000569394 DSTQ03001 7570 aaKnown RBP3.21□□□□□ -1.9
GTF3C1-210ENST00000569394 MT1GP13640 62 aa3.21□□□□□ -1.9
GTF3C1-210ENST00000569394 MT1LQ93083 61 aa3.21□□□□□ -1.9
GTF3C1-210ENST00000569394 MT1MQ8N339 61 aa3.19□□□□□ -1.9
GTF3C1-210ENST00000569394 KRTAP4-3Q9BYR4 195 aa3.19□□□□□ -1.9
GTF3C1-210ENST00000569394 PP632Q6XCG6 107 aa3.18□□□□□ -1.9
GTF3C1-210ENST00000569394 KRTAP12-3P60328 96 aa3.17□□□□□ -1.9
GTF3C1-210ENST00000569394 KRTAP25-1Q3LHN0 102 aa3.14□□□□□ -1.91
GTF3C1-210ENST00000569394 RPS28P62857 69 aaKnown RBP3.13□□□□□ -1.91
GTF3C1-210ENST00000569394 CDC42SE1Q9NRR8 79 aa3.09□□□□□ -1.91
GTF3C1-210ENST00000569394 MT4P47944 62 aa3.06□□□□□ -1.92
GTF3C1-210ENST00000569394 ROMO1P60602 79 aa3.04□□□□□ -1.92
GTF3C1-210ENST00000569394 KRTAP5-10Q6L8G5 202 aa3.03□□□□□ -1.92
GTF3C1-210ENST00000569394 HMCN1Q96RW7 5635 aa3.01□□□□□ -1.93
GTF3C1-210ENST00000569394 AHNAK2Q8IVF2 5795 aa3.01□□□□□ -1.93
GTF3C1-210ENST00000569394 LCE3EQ5T5B0 92 aa2.97□□□□□ -1.93
GTF3C1-210ENST00000569394 KRTAP5-7Q6L8G8 165 aa2.97□□□□□ -1.93
GTF3C1-210ENST00000569394 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
GTF3C1-210ENST00000569394 KRTAP5-4Q6L8H1 288 aa2.92□□□□□ -1.94
GTF3C1-210ENST00000569394 BRK1Q8WUW1 75 aa2.89□□□□□ -1.95
GTF3C1-210ENST00000569394 SPRR5A0A1B0GTR4 108 aa2.87□□□□□ -1.95
GTF3C1-210ENST00000569394 KRTAP5-5Q701N2 237 aaPredicted RBP2.85□□□□□ -1.95
GTF3C1-210ENST00000569394 SYNE1Q8NF91 8797 aaKnown RBP2.81□□□□□ -1.96
GTF3C1-210ENST00000569394 KRTAP5-11Q6L8G4 156 aa2.81□□□□□ -1.96
GTF3C1-210ENST00000569394 KRTAP12-4P60329 112 aa2.8□□□□□ -1.96
GTF3C1-210ENST00000569394 KRTAP20-2Q3LI61 65 aa2.8□□□□□ -1.96
GTF3C1-210ENST00000569394 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
GTF3C1-210ENST00000569394 PRO0628Q9UI54 55 aa2.8□□□□□ -1.96
GTF3C1-210ENST00000569394 KRTAP9-6A8MVA2 160 aa2.78□□□□□ -1.96
GTF3C1-210ENST00000569394 KRTAP6-1Q3LI64 71 aa2.74□□□□□ -1.97
GTF3C1-210ENST00000569394 MT1AP04731 61 aa2.72□□□□□ -1.97
GTF3C1-210ENST00000569394 PMAIP1Q13794 54 aa2.69□□□□□ -1.98
GTF3C1-210ENST00000569394 KRTAP6-2Q3LI66 62 aa2.61□□□□□ -1.99
GTF3C1-210ENST00000569394 KRTAP5-2Q701N4 177 aa2.57□□□□□ -2
GTF3C1-210ENST00000569394 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
GTF3C1-210ENST00000569394 LCE3DQ9BYE3 92 aa2.55□□□□□ -2
GTF3C1-210ENST00000569394 MUC5ACP98088 5654 aa2.54□□□□□ -2
GTF3C1-210ENST00000569394 KRTAP5-8O75690 187 aa2.53□□□□□ -2
GTF3C1-210ENST00000569394 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.52□□□□□ -2.01
GTF3C1-210ENST00000569394 MUC5BQ9HC84 5762 aaPredicted RBP2.49□□□□□ -2.01
GTF3C1-210ENST00000569394 OBSCNQ5VST9 7968 aa2.42□□□□□ -2.02
GTF3C1-210ENST00000569394 KTN1-AS1Q86SY8 53 aa2.38□□□□□ -2.03
GTF3C1-210ENST00000569394 KRTAP5-1Q6L8H4 278 aa2.31□□□□□ -2.04
GTF3C1-210ENST00000569394 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
GTF3C1-210ENST00000569394 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
GTF3C1-210ENST00000569394 LCE1CQ5T751 118 aa2.05□□□□□ -2.08
GTF3C1-210ENST00000569394 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
GTF3C1-210ENST00000569394 KRTAP21-2Q3LI59 83 aa1.77□□□□□ -2.13
GTF3C1-210ENST00000569394 PRM1P04553 51 aa1.6□□□□□ -2.15
GTF3C1-210ENST00000569394 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
GTF3C1-210ENST00000569394 INE1O15225 51 aa1.51□□□□□ -2.17
GTF3C1-210ENST00000569394 KRTAP21-1Q3LI58 79 aa1.38□□□□□ -2.19
GTF3C1-210ENST00000569394 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 131.3 ms