RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 KRTAP10-12P60413 245 aa4.24□□□□□ -1.73
CDH3-210ENST00000569117 MACF1Q9UPN3 7388 aaKnown RBP4.18□□□□□ -1.74
CDH3-210ENST00000569117 LCE3CQ5T5A8 94 aa4.17□□□□□ -1.74
CDH3-210ENST00000569117 BRK1Q8WUW1 75 aa4.17□□□□□ -1.74
CDH3-210ENST00000569117 C10orf95Q9H7T3 257 aa4.17□□□□□ -1.74
CDH3-210ENST00000569117 KRTAP10-7P60409 375 aaPredicted RBP4.16□□□□□ -1.74
CDH3-210ENST00000569117 TNP1P09430 55 aa4.1□□□□□ -1.75
CDH3-210ENST00000569117 KMT2DO14686 5537 aa4.05□□□□□ -1.76
CDH3-210ENST00000569117 ROMO1P60602 79 aa4.05□□□□□ -1.76
CDH3-210ENST00000569117 KRTAP25-1Q3LHN0 102 aa4.05□□□□□ -1.76
CDH3-210ENST00000569117 SYNE2Q8WXH0 6885 aaKnown RBP4.05□□□□□ -1.76
CDH3-210ENST00000569117 KRTAP8-1Q8IUC2 63 aa4.02□□□□□ -1.77
CDH3-210ENST00000569117 KRTAP6-3Q3LI67 103 aa4.01□□□□□ -1.77
CDH3-210ENST00000569117 KRTAP5-9P26371 169 aa3.99□□□□□ -1.77
CDH3-210ENST00000569117 PMAIP1Q13794 54 aa3.98□□□□□ -1.77
CDH3-210ENST00000569117 LCE3AQ5TA76 89 aa3.97□□□□□ -1.77
CDH3-210ENST00000569117 SPRR2FQ96RM1 72 aa3.92□□□□□ -1.78
CDH3-210ENST00000569117 KRTAP19-7Q3SYF9 63 aa3.9□□□□□ -1.79
CDH3-210ENST00000569117 KRTAP19-5Q3LI72 72 aa3.87□□□□□ -1.79
CDH3-210ENST00000569117 MT1EP04732 61 aa3.85□□□□□ -1.79
CDH3-210ENST00000569117 PP632Q6XCG6 107 aa3.85□□□□□ -1.79
CDH3-210ENST00000569117 MUC12Q9UKN1 5478 aa3.84□□□□□ -1.8
CDH3-210ENST00000569117 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
CDH3-210ENST00000569117 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
CDH3-210ENST00000569117 MDN1Q9NU22 5596 aa3.8□□□□□ -1.8
CDH3-210ENST00000569117 SPRR2EP22531 72 aa3.79□□□□□ -1.8
CDH3-210ENST00000569117 SPRR2BP35325 72 aa3.79□□□□□ -1.8
CDH3-210ENST00000569117 SPRR2AP35326 72 aa3.79□□□□□ -1.8
CDH3-210ENST00000569117 NEBP20929 6669 aa3.77□□□□□ -1.81
CDH3-210ENST00000569117 KRTAP19-3Q7Z4W3 81 aa3.75□□□□□ -1.81
CDH3-210ENST00000569117 MT1LQ93083 61 aa3.73□□□□□ -1.81
CDH3-210ENST00000569117 KTN1-AS1Q86SY8 53 aa3.72□□□□□ -1.81
CDH3-210ENST00000569117 MT1GP13640 62 aa3.68□□□□□ -1.82
CDH3-210ENST00000569117 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
CDH3-210ENST00000569117 SPRR2DP22532 72 aa3.66□□□□□ -1.82
CDH3-210ENST00000569117 MT1MQ8N339 61 aa3.64□□□□□ -1.83
CDH3-210ENST00000569117 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
CDH3-210ENST00000569117 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
CDH3-210ENST00000569117 KRTAP20-1Q3LI63 56 aa3.55□□□□□ -1.84
CDH3-210ENST00000569117 KRTAP2-3P0C7H8 128 aa3.54□□□□□ -1.84
CDH3-210ENST00000569117 KRTAP2-4Q9BYR9 128 aa3.54□□□□□ -1.84
CDH3-210ENST00000569117 KRTAP4-3Q9BYR4 195 aa3.52□□□□□ -1.85
CDH3-210ENST00000569117 DSTQ03001 7570 aaKnown RBP3.51□□□□□ -1.85
CDH3-210ENST00000569117 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
CDH3-210ENST00000569117 KRTAP2-1Q9BYU5 128 aa3.44□□□□□ -1.86
CDH3-210ENST00000569117 KRTAP5-11Q6L8G4 156 aa3.38□□□□□ -1.87
CDH3-210ENST00000569117 KRTAP5-5Q701N2 237 aaPredicted RBP3.32□□□□□ -1.88
CDH3-210ENST00000569117 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
CDH3-210ENST00000569117 KRTAP5-4Q6L8H1 288 aa3.29□□□□□ -1.88
CDH3-210ENST00000569117 MT1AP04731 61 aa3.19□□□□□ -1.9
CDH3-210ENST00000569117 MT4P47944 62 aa3.16□□□□□ -1.9
CDH3-210ENST00000569117 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
CDH3-210ENST00000569117 KRTAP12-4P60329 112 aa3.12□□□□□ -1.91
CDH3-210ENST00000569117 HMCN1Q96RW7 5635 aa3.1□□□□□ -1.91
CDH3-210ENST00000569117 KRTAP20-2Q3LI61 65 aa3.06□□□□□ -1.92
CDH3-210ENST00000569117 KRTAP5-1Q6L8H4 278 aa3.06□□□□□ -1.92
CDH3-210ENST00000569117 SYNE1Q8NF91 8797 aaKnown RBP3.05□□□□□ -1.92
CDH3-210ENST00000569117 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
CDH3-210ENST00000569117 KRTAP5-2Q701N4 177 aa2.95□□□□□ -1.94
CDH3-210ENST00000569117 KRTAP6-2Q3LI66 62 aa2.92□□□□□ -1.94
CDH3-210ENST00000569117 GPR98Q8WXG9 6306 aa2.89□□□□□ -1.95
CDH3-210ENST00000569117 AHNAK2Q8IVF2 5795 aa2.84□□□□□ -1.95
CDH3-210ENST00000569117 KRTAP5-10Q6L8G5 202 aa2.77□□□□□ -1.97
CDH3-210ENST00000569117 INE1O15225 51 aa2.72□□□□□ -1.97
CDH3-210ENST00000569117 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
CDH3-210ENST00000569117 KRTAP5-7Q6L8G8 165 aa2.62□□□□□ -1.99
CDH3-210ENST00000569117 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
CDH3-210ENST00000569117 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
CDH3-210ENST00000569117 LCE1BQ5T7P3 118 aa2.5□□□□□ -2.01
CDH3-210ENST00000569117 MUC5ACP98088 5654 aa2.47□□□□□ -2.01
CDH3-210ENST00000569117 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
CDH3-210ENST00000569117 AHNAKQ09666 5890 aaKnown RBP2.26□□□□□ -2.05
CDH3-210ENST00000569117 PRM1P04553 51 aa2.09□□□□□ -2.07
CDH3-210ENST00000569117 KRTAP21-2Q3LI59 83 aa2.07□□□□□ -2.08
CDH3-210ENST00000569117 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
CDH3-210ENST00000569117 PHGR1C9JFL3 82 aa1.84□□□□□ -2.11
CDH3-210ENST00000569117 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
CDH3-210ENST00000569117 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 63.6 ms