RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 KRTAP5-7Q6L8G8 165 aa5.17□□□□□ -1.58
CLN3-235ENST00000568497 KRTAP19-5Q3LI72 72 aa5.16□□□□□ -1.58
CLN3-235ENST00000568497 LCE4AQ5TA78 99 aa5.16□□□□□ -1.58
CLN3-235ENST00000568497 SPRR5A0A1B0GTR4 108 aa5.15□□□□□ -1.59
CLN3-235ENST00000568497 MIR22HGQ0VDD5 57 aa5.15□□□□□ -1.59
CLN3-235ENST00000568497 Q1T7F1 81 aa5.15□□□□□ -1.59
CLN3-235ENST00000568497 MT1EP04732 61 aa5.14□□□□□ -1.59
CLN3-235ENST00000568497 LCE3AQ5TA76 89 aa5.13□□□□□ -1.59
CLN3-235ENST00000568497 K7ERS5 55 aa5.1□□□□□ -1.59
CLN3-235ENST00000568497 RPS28P62857 69 aaKnown RBP5.09□□□□□ -1.59
CLN3-235ENST00000568497 TNP1P09430 55 aa5.08□□□□□ -1.6
CLN3-235ENST00000568497 KRTAP19-3Q7Z4W3 81 aa5.07□□□□□ -1.6
CLN3-235ENST00000568497 KRTAP5-3Q6L8H2 238 aa5.03□□□□□ -1.6
CLN3-235ENST00000568497 A6NED7 52 aa5□□□□□ -1.61
CLN3-235ENST00000568497 KRTAP4-6Q9BYQ5 205 aa5□□□□□ -1.61
CLN3-235ENST00000568497 KRTAP5-4Q6L8H1 288 aa4.94□□□□□ -1.62
CLN3-235ENST00000568497 MT1LQ93083 61 aa4.94□□□□□ -1.62
CLN3-235ENST00000568497 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
CLN3-235ENST00000568497 KRTAP25-1Q3LHN0 102 aa4.9□□□□□ -1.63
CLN3-235ENST00000568497 MT1GP13640 62 aa4.89□□□□□ -1.63
CLN3-235ENST00000568497 MT1MQ8N339 61 aa4.89□□□□□ -1.63
CLN3-235ENST00000568497 PP632Q6XCG6 107 aa4.87□□□□□ -1.63
CLN3-235ENST00000568497 KRTAP4-7Q9BYR0 210 aa4.86□□□□□ -1.63
CLN3-235ENST00000568497 KRTAP12-3P60328 96 aa4.85□□□□□ -1.63
CLN3-235ENST00000568497 CDC42SE1Q9NRR8 79 aa4.78□□□□□ -1.64
CLN3-235ENST00000568497 LOC100996750A0A140TA64 210 aa4.76□□□□□ -1.65
CLN3-235ENST00000568497 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
CLN3-235ENST00000568497 KRTAP20-2Q3LI61 65 aa4.71□□□□□ -1.66
CLN3-235ENST00000568497 ROMO1P60602 79 aa4.7□□□□□ -1.66
CLN3-235ENST00000568497 KRTAP19-4Q3LI73 84 aa4.67□□□□□ -1.66
CLN3-235ENST00000568497 KRTAP15-1Q3LI76 137 aa4.57□□□□□ -1.68
CLN3-235ENST00000568497 AHNAKQ09666 5890 aaKnown RBP4.57□□□□□ -1.68
CLN3-235ENST00000568497 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
CLN3-235ENST00000568497 MUC5ACP98088 5654 aa4.51□□□□□ -1.69
CLN3-235ENST00000568497 BRK1Q8WUW1 75 aa4.5□□□□□ -1.69
CLN3-235ENST00000568497 LCE3CQ5T5A8 94 aa4.48□□□□□ -1.69
CLN3-235ENST00000568497 SYNE1Q8NF91 8797 aaKnown RBP4.47□□□□□ -1.69
CLN3-235ENST00000568497 KRTAP4-11Q9BYQ6 195 aa4.46□□□□□ -1.7
CLN3-235ENST00000568497 KRTAP5-5Q701N2 237 aaPredicted RBP4.45□□□□□ -1.7
CLN3-235ENST00000568497 MUC5BQ9HC84 5762 aaPredicted RBP4.43□□□□□ -1.7
CLN3-235ENST00000568497 KRTAP5-8O75690 187 aa4.38□□□□□ -1.71
CLN3-235ENST00000568497 KRTAP9-6A8MVA2 160 aa4.34□□□□□ -1.71
CLN3-235ENST00000568497 SVIPQ8NHG7 77 aa4.34□□□□□ -1.71
CLN3-235ENST00000568497 KRTAP9-9Q9BYP9 154 aa4.25□□□□□ -1.73
CLN3-235ENST00000568497 PMAIP1Q13794 54 aa4.23□□□□□ -1.73
CLN3-235ENST00000568497 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
CLN3-235ENST00000568497 KRTAP5-2Q701N4 177 aa4.23□□□□□ -1.73
CLN3-235ENST00000568497 OBSCNQ5VST9 7968 aa4.19□□□□□ -1.74
CLN3-235ENST00000568497 PRAC1Q96KF2 57 aa4.18□□□□□ -1.74
CLN3-235ENST00000568497 MT1AP04731 61 aa4.17□□□□□ -1.74
CLN3-235ENST00000568497 PRO0628Q9UI54 55 aa4.08□□□□□ -1.76
CLN3-235ENST00000568497 KRTAP9-4Q9BYQ2 154 aa4.01□□□□□ -1.77
CLN3-235ENST00000568497 KRTAP4-12Q9BQ66 201 aa4□□□□□ -1.77
CLN3-235ENST00000568497 KRTAP6-2Q3LI66 62 aa3.99□□□□□ -1.77
CLN3-235ENST00000568497 KRTAP5-1Q6L8H4 278 aa3.89□□□□□ -1.79
CLN3-235ENST00000568497 KTN1-AS1Q86SY8 53 aa3.87□□□□□ -1.79
CLN3-235ENST00000568497 MT3P25713 68 aa3.76□□□□□ -1.81
CLN3-235ENST00000568497 KRTAP4-2Q9BYR5 136 aa3.71□□□□□ -1.82
CLN3-235ENST00000568497 LCE1EQ5T753 118 aa3.52□□□□□ -1.85
CLN3-235ENST00000568497 LUZP6Q538Z0 58 aa3.46□□□□□ -1.86
CLN3-235ENST00000568497 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
CLN3-235ENST00000568497 LCE1CQ5T751 118 aa3.26□□□□□ -1.89
CLN3-235ENST00000568497 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
CLN3-235ENST00000568497 PHGR1C9JFL3 82 aa3.17□□□□□ -1.9
CLN3-235ENST00000568497 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
CLN3-235ENST00000568497 LCE1FQ5T754 118 aa3.09□□□□□ -1.91
CLN3-235ENST00000568497 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
CLN3-235ENST00000568497 H3BS24 57 aa2.96□□□□□ -1.94
CLN3-235ENST00000568497 NDUFAF8A1L188 74 aa2.92□□□□□ -1.94
CLN3-235ENST00000568497 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.9□□□□□ -1.95
CLN3-235ENST00000568497 KRTAP21-2Q3LI59 83 aa2.74□□□□□ -1.97
CLN3-235ENST00000568497 MUC19Q7Z5P9 8384 aa2.66□□□□□ -1.98
CLN3-235ENST00000568497 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
CLN3-235ENST00000568497 A0A0A0MQY5 61 aa2.63□□□□□ -1.99
CLN3-235ENST00000568497 PRM1P04553 51 aa2.5□□□□□ -2.01
CLN3-235ENST00000568497 INE1O15225 51 aa2.47□□□□□ -2.01
CLN3-235ENST00000568497 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
CLN3-235ENST00000568497 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 49.9 ms