RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DEFB108AA8MXU0 73 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 MT1GP13640 62 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 HTN3P15516 51 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 MT4P47944 62 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 MT1XP80297 61 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 HERC1Q15751 4861 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 MUC2Q02817 5179 aa-0.03□□□□□ -2.41
VPS35-207ENST00000568191 K7EIM0 57 aa-0.04□□□□□ -2.42
VPS35-207ENST00000568191 MT1EP04732 61 aa-0.04□□□□□ -2.42
VPS35-207ENST00000568191 MT1LQ93083 61 aa-0.04□□□□□ -2.42
VPS35-207ENST00000568191 DMDP11532 3685 aa-0.04□□□□□ -2.42
VPS35-207ENST00000568191 WDFY4Q6ZS81 3184 aa-0.04□□□□□ -2.42
VPS35-207ENST00000568191 MUC17Q685J3 4493 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 DNAH12Q6ZR08 3092 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 MT1HL1P0DM35 61 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 MT1MQ8N339 61 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 MUC12Q9UKN1 5478 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 FREM2Q5SZK8 3169 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 FAT1Q14517 4588 aa-0.05□□□□□ -2.42
VPS35-207ENST00000568191 EYSQ5T1H1 3165 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 STARD9Q9P2P6 4700 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 KMT2CQ8NEZ4 4911 aaKnown RBP-0.06□□□□□ -2.42
VPS35-207ENST00000568191 PLECQ15149 4684 aaKnown RBP-0.06□□□□□ -2.42
VPS35-207ENST00000568191 PCNTO95613 3336 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 MUC3AQ02505 3323 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 UBR4Q5T4S7 5183 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 DNAH10Q8IVF4 4471 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 SZT2Q5T011 3432 aa-0.06□□□□□ -2.42
VPS35-207ENST00000568191 DSTQ03001 7570 aaKnown RBP-0.06□□□□□ -2.42
VPS35-207ENST00000568191 DNAH17Q9UFH2 4485 aa-0.07□□□□□ -2.42
VPS35-207ENST00000568191 MT2AP02795 61 aa-0.07□□□□□ -2.42
VPS35-207ENST00000568191 DEFB108BQ8NET1 73 aa-0.07□□□□□ -2.42
VPS35-207ENST00000568191 VPS13CQ709C8 3753 aa-0.07□□□□□ -2.42
VPS35-207ENST00000568191 XIRP2A4UGR9 3374 aa-0.07□□□□□ -2.42
VPS35-207ENST00000568191 MYO15AQ9UKN7 3530 aa-0.08□□□□□ -2.42
VPS35-207ENST00000568191 DYNC1H1Q14204 4646 aaKnown RBP-0.08□□□□□ -2.42
VPS35-207ENST00000568191 MKI67P46013 3256 aaKnown RBP-0.08□□□□□ -2.42
VPS35-207ENST00000568191 STATHP02808 62 aa-0.08□□□□□ -2.42
VPS35-207ENST00000568191 MT1BP07438 61 aa-0.08□□□□□ -2.42
VPS35-207ENST00000568191 CEP350Q5VT06 3117 aa-0.08□□□□□ -2.42
VPS35-207ENST00000568191 BOD1L1Q8NFC6 3051 aa-0.08□□□□□ -2.42
VPS35-207ENST00000568191 RYR1P21817 5038 aa-0.08□□□□□ -2.42
VPS35-207ENST00000568191 Q9Y3F1 56 aa-0.09□□□□□ -2.42
VPS35-207ENST00000568191 HERC2O95714 4834 aa-0.1□□□□□ -2.43
VPS35-207ENST00000568191 DNHD1Q96M86 4753 aa-0.1□□□□□ -2.43
VPS35-207ENST00000568191 MT1FP04733 61 aa-0.1□□□□□ -2.43
VPS35-207ENST00000568191 USH2AO75445 5202 aa-0.1□□□□□ -2.43
VPS35-207ENST00000568191 USP34Q70CQ2 3546 aa-0.1□□□□□ -2.43
VPS35-207ENST00000568191 DNAH5Q8TE73 4624 aa-0.1□□□□□ -2.43
VPS35-207ENST00000568191 WDFY3Q8IZQ1 3526 aa-0.11□□□□□ -2.43
VPS35-207ENST00000568191 COX14Q96I36 57 aa-0.11□□□□□ -2.43
VPS35-207ENST00000568191 SPEGQ15772 3267 aa-0.12□□□□□ -2.43
VPS35-207ENST00000568191 DCHS1Q96JQ0 3298 aa-0.12□□□□□ -2.43
VPS35-207ENST00000568191 KRTAP20-1Q3LI63 56 aa-0.12□□□□□ -2.43
VPS35-207ENST00000568191 BIRC6Q9NR09 4857 aa-0.12□□□□□ -2.43
VPS35-207ENST00000568191 EPPK1P58107 5090 aaKnown RBP-0.12□□□□□ -2.43
VPS35-207ENST00000568191 EP400Q96L91 3159 aa-0.12□□□□□ -2.43
VPS35-207ENST00000568191 RYR3Q15413 4870 aa-0.13□□□□□ -2.43
VPS35-207ENST00000568191 KRTAP19-6Q3LI70 58 aa-0.13□□□□□ -2.43
VPS35-207ENST00000568191 NEBP20929 6669 aa-0.15□□□□□ -2.43
VPS35-207ENST00000568191 LOC400499M0QZD8 3231 aa-0.15□□□□□ -2.43
VPS35-207ENST00000568191 KRTAP19-2Q3LHN2 52 aa-0.15□□□□□ -2.43
VPS35-207ENST00000568191 CFAP47Q6ZTR5 3102 aa-0.15□□□□□ -2.43
VPS35-207ENST00000568191 VCANP13611 3396 aa-0.15□□□□□ -2.43
VPS35-207ENST00000568191 ASPMQ8IZT6 3477 aa-0.16□□□□□ -2.43
VPS35-207ENST00000568191 UNC80Q8N2C7 3258 aa-0.16□□□□□ -2.44
VPS35-207ENST00000568191 RYR2Q92736 4967 aa-0.16□□□□□ -2.44
VPS35-207ENST00000568191 RNF213Q63HN8 5207 aa-0.18□□□□□ -2.44
VPS35-207ENST00000568191 HYDINQ4G0P3 5121 aa-0.18□□□□□ -2.44
VPS35-207ENST00000568191 KIAA1109Q2LD37 5005 aa-0.19□□□□□ -2.44
VPS35-207ENST00000568191 BRCA2P51587 3418 aa-0.19□□□□□ -2.44
VPS35-207ENST00000568191 UTRNP46939 3433 aa-0.2□□□□□ -2.44
VPS35-207ENST00000568191 DNAH14Q0VDD8 3507 aa-0.21□□□□□ -2.44
VPS35-207ENST00000568191 ABCA13Q86UQ4 5058 aa-0.21□□□□□ -2.44
VPS35-207ENST00000568191 CENPFP49454 3210 aa-0.21□□□□□ -2.44
VPS35-207ENST00000568191 VPS13AQ96RL7 3174 aa-0.22□□□□□ -2.45
VPS35-207ENST00000568191 GOLGB1Q14789 3259 aaKnown RBP-0.25□□□□□ -2.45
VPS35-207ENST00000568191 CDH23Q9H251 3354 aa-0.26□□□□□ -2.45
Retrieved 78 of 20,778 RNA–protein pairs in 59.5 ms