RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 KRTAP2-4Q9BYR9 128 aa5.2□□□□□ -1.58
CLK3-218ENST00000566926 SPRR2DP22532 72 aa5.12□□□□□ -1.59
CLK3-218ENST00000566926 PRAC1Q96KF2 57 aa5.12□□□□□ -1.59
CLK3-218ENST00000566926 LCE3AQ5TA76 89 aa5.05□□□□□ -1.6
CLK3-218ENST00000566926 KRTAP2-2Q9BYT5 123 aa5.04□□□□□ -1.6
CLK3-218ENST00000566926 KRTAP2-1Q9BYU5 128 aa5.04□□□□□ -1.6
CLK3-218ENST00000566926 KRTAP19-7Q3SYF9 63 aa5□□□□□ -1.61
CLK3-218ENST00000566926 SVIPQ8NHG7 77 aa4.99□□□□□ -1.61
CLK3-218ENST00000566926 MT1EP04732 61 aa4.97□□□□□ -1.61
CLK3-218ENST00000566926 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
CLK3-218ENST00000566926 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
CLK3-218ENST00000566926 KRTAP12-3P60328 96 aa4.91□□□□□ -1.62
CLK3-218ENST00000566926 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
CLK3-218ENST00000566926 LCE5AQ5TCM9 118 aa4.91□□□□□ -1.62
CLK3-218ENST00000566926 MT1GP13640 62 aa4.85□□□□□ -1.63
CLK3-218ENST00000566926 KRTAP19-4Q3LI73 84 aa4.79□□□□□ -1.64
CLK3-218ENST00000566926 KRTAP15-1Q3LI76 137 aa4.79□□□□□ -1.64
CLK3-218ENST00000566926 MT1LQ93083 61 aa4.76□□□□□ -1.65
CLK3-218ENST00000566926 DSTQ03001 7570 aaKnown RBP4.73□□□□□ -1.65
CLK3-218ENST00000566926 MT1MQ8N339 61 aa4.73□□□□□ -1.65
CLK3-218ENST00000566926 LOC100996750A0A140TA64 210 aa4.65□□□□□ -1.67
CLK3-218ENST00000566926 KRTAP4-6Q9BYQ5 205 aa4.65□□□□□ -1.67
CLK3-218ENST00000566926 LCE3CQ5T5A8 94 aa4.57□□□□□ -1.68
CLK3-218ENST00000566926 LCE4AQ5TA78 99 aa4.56□□□□□ -1.68
CLK3-218ENST00000566926 KRTAP4-3Q9BYR4 195 aa4.56□□□□□ -1.68
CLK3-218ENST00000566926 KRTAP4-9Q9BYQ8 210 aa4.55□□□□□ -1.68
CLK3-218ENST00000566926 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
CLK3-218ENST00000566926 SPRR5A0A1B0GTR4 108 aa4.48□□□□□ -1.69
CLK3-218ENST00000566926 LCE1DQ5T752 114 aa4.48□□□□□ -1.69
CLK3-218ENST00000566926 KRTAP5-4Q6L8H1 288 aa4.45□□□□□ -1.7
CLK3-218ENST00000566926 MT4P47944 62 aa4.44□□□□□ -1.7
CLK3-218ENST00000566926 HMCN1Q96RW7 5635 aa4.36□□□□□ -1.71
CLK3-218ENST00000566926 LUZP6Q538Z0 58 aa4.36□□□□□ -1.71
CLK3-218ENST00000566926 KRTAP5-5Q701N2 237 aaPredicted RBP4.31□□□□□ -1.72
CLK3-218ENST00000566926 GPR98Q8WXG9 6306 aa4.29□□□□□ -1.72
CLK3-218ENST00000566926 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
CLK3-218ENST00000566926 KRTAP9-6A8MVA2 160 aa4.22□□□□□ -1.73
CLK3-218ENST00000566926 KRTAP20-2Q3LI61 65 aa4.19□□□□□ -1.74
CLK3-218ENST00000566926 AHNAK2Q8IVF2 5795 aa4.18□□□□□ -1.74
CLK3-218ENST00000566926 KRTAP5-10Q6L8G5 202 aa4.11□□□□□ -1.75
CLK3-218ENST00000566926 MT1AP04731 61 aa4.07□□□□□ -1.76
CLK3-218ENST00000566926 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
CLK3-218ENST00000566926 NDUFAF8A1L188 74 aa4.06□□□□□ -1.76
CLK3-218ENST00000566926 KRTAP5-3Q6L8H2 238 aa4.06□□□□□ -1.76
CLK3-218ENST00000566926 KRTAP6-1Q3LI64 71 aa4.02□□□□□ -1.77
CLK3-218ENST00000566926 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
CLK3-218ENST00000566926 KRTAP5-7Q6L8G8 165 aa3.95□□□□□ -1.78
CLK3-218ENST00000566926 KRTAP9-9Q9BYP9 154 aa3.95□□□□□ -1.78
CLK3-218ENST00000566926 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
CLK3-218ENST00000566926 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
CLK3-218ENST00000566926 KRTAP6-2Q3LI66 62 aa3.82□□□□□ -1.8
CLK3-218ENST00000566926 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
CLK3-218ENST00000566926 MT3P25713 68 aa3.75□□□□□ -1.81
CLK3-218ENST00000566926 KRTAP5-8O75690 187 aa3.66□□□□□ -1.82
CLK3-218ENST00000566926 A0A0A0MQY5 61 aa3.65□□□□□ -1.83
CLK3-218ENST00000566926 KRTAP4-2Q9BYR5 136 aa3.63□□□□□ -1.83
CLK3-218ENST00000566926 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
CLK3-218ENST00000566926 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
CLK3-218ENST00000566926 INE1O15225 51 aa3.47□□□□□ -1.85
CLK3-218ENST00000566926 LCE3DQ9BYE3 92 aa3.43□□□□□ -1.86
CLK3-218ENST00000566926 MUC5BQ9HC84 5762 aaPredicted RBP3.42□□□□□ -1.86
CLK3-218ENST00000566926 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
CLK3-218ENST00000566926 MUC5ACP98088 5654 aa3.4□□□□□ -1.87
CLK3-218ENST00000566926 AHNAKQ09666 5890 aaKnown RBP3.39□□□□□ -1.87
CLK3-218ENST00000566926 H3BS24 57 aa3.35□□□□□ -1.87
CLK3-218ENST00000566926 LCE3EQ5T5B0 92 aa3.33□□□□□ -1.88
CLK3-218ENST00000566926 LCE1BQ5T7P3 118 aa3.18□□□□□ -1.9
CLK3-218ENST00000566926 LCE1CQ5T751 118 aa3.16□□□□□ -1.9
CLK3-218ENST00000566926 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
CLK3-218ENST00000566926 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
CLK3-218ENST00000566926 PRM1P04553 51 aa2.81□□□□□ -1.96
CLK3-218ENST00000566926 LCE1FQ5T754 118 aa2.78□□□□□ -1.96
CLK3-218ENST00000566926 KRTAP21-2Q3LI59 83 aa2.64□□□□□ -1.99
CLK3-218ENST00000566926 PHGR1C9JFL3 82 aa2.45□□□□□ -2.02
CLK3-218ENST00000566926 KRTAP4-4Q9BYR3 166 aa2.38□□□□□ -2.03
CLK3-218ENST00000566926 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
CLK3-218ENST00000566926 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
CLK3-218ENST00000566926 MUC16Q8WXI7 14507 aa1.6□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 89.4 ms