RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 KRTAP25-1Q3LHN0 102 aa7.06□□□□□ -1.28
CLN3-225ENST00000566824 SVIPQ8NHG7 77 aa7.01□□□□□ -1.29
CLN3-225ENST00000566824 MT1LQ93083 61 aa7□□□□□ -1.29
CLN3-225ENST00000566824 LCE3BQ5TA77 95 aa6.97□□□□□ -1.29
CLN3-225ENST00000566824 MT1GP13640 62 aa6.94□□□□□ -1.3
CLN3-225ENST00000566824 KRTAP12-3P60328 96 aa6.94□□□□□ -1.3
CLN3-225ENST00000566824 KRTAP2-2Q9BYT5 123 aa6.94□□□□□ -1.3
CLN3-225ENST00000566824 KRTAP2-1Q9BYU5 128 aa6.94□□□□□ -1.3
CLN3-225ENST00000566824 ROMO1P60602 79 aa6.89□□□□□ -1.31
CLN3-225ENST00000566824 MT1MQ8N339 61 aa6.89□□□□□ -1.31
CLN3-225ENST00000566824 DSTQ03001 7570 aaKnown RBP6.82□□□□□ -1.32
CLN3-225ENST00000566824 PP632Q6XCG6 107 aa6.81□□□□□ -1.32
CLN3-225ENST00000566824 KRTAP4-3Q9BYR4 195 aa6.8□□□□□ -1.32
CLN3-225ENST00000566824 KRTAP23-1A1A580 65 aa6.79□□□□□ -1.32
CLN3-225ENST00000566824 KRTAP4-7Q9BYR0 210 aa6.76□□□□□ -1.33
CLN3-225ENST00000566824 PRO0628Q9UI54 55 aa6.71□□□□□ -1.34
CLN3-225ENST00000566824 BRK1Q8WUW1 75 aa6.68□□□□□ -1.34
CLN3-225ENST00000566824 KRTAP15-1Q3LI76 137 aa6.59□□□□□ -1.35
CLN3-225ENST00000566824 KRTAP4-9Q9BYQ8 210 aa6.46□□□□□ -1.38
CLN3-225ENST00000566824 LCE3CQ5T5A8 94 aa6.44□□□□□ -1.38
CLN3-225ENST00000566824 KRTAP19-4Q3LI73 84 aa6.43□□□□□ -1.38
CLN3-225ENST00000566824 LOC100996750A0A140TA64 210 aa6.37□□□□□ -1.39
CLN3-225ENST00000566824 KRTAP5-4Q6L8H1 288 aa6.35□□□□□ -1.39
CLN3-225ENST00000566824 LCE4AQ5TA78 99 aa6.34□□□□□ -1.39
CLN3-225ENST00000566824 LCE1DQ5T752 114 aa6.32□□□□□ -1.4
CLN3-225ENST00000566824 MT4P47944 62 aa6.29□□□□□ -1.4
CLN3-225ENST00000566824 KRTAP5-5Q701N2 237 aaPredicted RBP6.28□□□□□ -1.4
CLN3-225ENST00000566824 PMAIP1Q13794 54 aa6.27□□□□□ -1.41
CLN3-225ENST00000566824 HMCN1Q96RW7 5635 aa6.24□□□□□ -1.41
CLN3-225ENST00000566824 KRTAP4-6Q9BYQ5 205 aa6.2□□□□□ -1.42
CLN3-225ENST00000566824 KTN1-AS1Q86SY8 53 aa6.17□□□□□ -1.42
CLN3-225ENST00000566824 KRTAP9-6A8MVA2 160 aa6.16□□□□□ -1.42
CLN3-225ENST00000566824 PRAC1Q96KF2 57 aa6.08□□□□□ -1.44
CLN3-225ENST00000566824 KRTAP20-2Q3LI61 65 aa5.97□□□□□ -1.45
CLN3-225ENST00000566824 SYNE1Q8NF91 8797 aaKnown RBP5.95□□□□□ -1.46
CLN3-225ENST00000566824 KRTAP12-4P60329 112 aa5.95□□□□□ -1.46
CLN3-225ENST00000566824 GPR98Q8WXG9 6306 aa5.94□□□□□ -1.46
CLN3-225ENST00000566824 SPRR5A0A1B0GTR4 108 aa5.93□□□□□ -1.46
CLN3-225ENST00000566824 MT1AP04731 61 aa5.93□□□□□ -1.46
CLN3-225ENST00000566824 KRTAP6-1Q3LI64 71 aa5.93□□□□□ -1.46
CLN3-225ENST00000566824 AHNAK2Q8IVF2 5795 aa5.92□□□□□ -1.46
CLN3-225ENST00000566824 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
CLN3-225ENST00000566824 KRTAP9-4Q9BYQ2 154 aa5.7□□□□□ -1.5
CLN3-225ENST00000566824 KRTAP5-10Q6L8G5 202 aa5.69□□□□□ -1.5
CLN3-225ENST00000566824 KRTAP5-2Q701N4 177 aa5.63□□□□□ -1.51
CLN3-225ENST00000566824 KRTAP6-2Q3LI66 62 aa5.58□□□□□ -1.52
CLN3-225ENST00000566824 KRTAP5-7Q6L8G8 165 aa5.39□□□□□ -1.55
CLN3-225ENST00000566824 MT3P25713 68 aa5.38□□□□□ -1.55
CLN3-225ENST00000566824 KRTAP4-11Q9BYQ6 195 aa5.35□□□□□ -1.55
CLN3-225ENST00000566824 KRTAP5-8O75690 187 aa5.19□□□□□ -1.58
CLN3-225ENST00000566824 OBSCNQ5VST9 7968 aa5.17□□□□□ -1.58
CLN3-225ENST00000566824 KRTAP5-1Q6L8H4 278 aa4.99□□□□□ -1.61
CLN3-225ENST00000566824 MUC5ACP98088 5654 aa4.95□□□□□ -1.62
CLN3-225ENST00000566824 LUZP6Q538Z0 58 aa4.9□□□□□ -1.63
CLN3-225ENST00000566824 H3BS24 57 aa4.88□□□□□ -1.63
CLN3-225ENST00000566824 LCE1EQ5T753 118 aa4.84□□□□□ -1.63
CLN3-225ENST00000566824 NDUFAF8A1L188 74 aa4.83□□□□□ -1.64
CLN3-225ENST00000566824 MUC5BQ9HC84 5762 aaPredicted RBP4.81□□□□□ -1.64
CLN3-225ENST00000566824 AHNAKQ09666 5890 aaKnown RBP4.79□□□□□ -1.64
CLN3-225ENST00000566824 KRTAP9-9Q9BYP9 154 aa4.78□□□□□ -1.64
CLN3-225ENST00000566824 LCE3DQ9BYE3 92 aa4.68□□□□□ -1.66
CLN3-225ENST00000566824 KRTAP4-2Q9BYR5 136 aa4.62□□□□□ -1.67
CLN3-225ENST00000566824 LCE1BQ5T7P3 118 aa4.59□□□□□ -1.67
CLN3-225ENST00000566824 LCE1CQ5T751 118 aa4.5□□□□□ -1.69
CLN3-225ENST00000566824 LCE3EQ5T5B0 92 aa4.46□□□□□ -1.7
CLN3-225ENST00000566824 A0A0A0MQY5 61 aa4.43□□□□□ -1.7
CLN3-225ENST00000566824 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.15□□□□□ -1.75
CLN3-225ENST00000566824 KRTAP4-12Q9BQ66 201 aa4.1□□□□□ -1.75
CLN3-225ENST00000566824 INE1O15225 51 aa4.08□□□□□ -1.76
CLN3-225ENST00000566824 KRTAP5-11Q6L8G4 156 aa4.05□□□□□ -1.76
CLN3-225ENST00000566824 KRTAP21-2Q3LI59 83 aa3.9□□□□□ -1.79
CLN3-225ENST00000566824 LCE1FQ5T754 118 aa3.81□□□□□ -1.8
CLN3-225ENST00000566824 PRM1P04553 51 aa3.58□□□□□ -1.84
CLN3-225ENST00000566824 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
CLN3-225ENST00000566824 PHGR1C9JFL3 82 aa3.5□□□□□ -1.85
CLN3-225ENST00000566824 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
CLN3-225ENST00000566824 KRTAP21-1Q3LI58 79 aa2.43□□□□□ -2.02
CLN3-225ENST00000566824 MUC16Q8WXI7 14507 aa2.23□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 89.9 ms