RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ACYP2P14621 99 aa5.6□□□□□ -1.51
CDH3-205ENST00000566808 LINC00643Q86TS7 51 aa5.6□□□□□ -1.51
CDH3-205ENST00000566808 C10orf95Q9H7T3 257 aa5.57□□□□□ -1.52
CDH3-205ENST00000566808 LOC100996750A0A140TA64 210 aa5.55□□□□□ -1.52
CDH3-205ENST00000566808 SERP1Q9Y6X1 66 aa5.55□□□□□ -1.52
CDH3-205ENST00000566808 MUC5BQ9HC84 5762 aaPredicted RBP5.55□□□□□ -1.52
CDH3-205ENST00000566808 SERP2Q8N6R1 65 aa5.54□□□□□ -1.52
CDH3-205ENST00000566808 KRTAP4-11Q9BYQ6 195 aa5.54□□□□□ -1.52
CDH3-205ENST00000566808 SMIM26A0A096LP01 95 aa5.53□□□□□ -1.52
CDH3-205ENST00000566808 KRTAP4-7Q9BYR0 210 aa5.53□□□□□ -1.52
CDH3-205ENST00000566808 SYNE1Q8NF91 8797 aaKnown RBP5.51□□□□□ -1.53
CDH3-205ENST00000566808 CHKB-CPT1BH3BT56 60 aa5.51□□□□□ -1.53
CDH3-205ENST00000566808 LCE3AQ5TA76 89 aa5.48□□□□□ -1.53
CDH3-205ENST00000566808 ATP5EP56381 51 aaPredicted RBP5.46□□□□□ -1.54
CDH3-205ENST00000566808 PMAIP1Q13794 54 aa5.46□□□□□ -1.54
CDH3-205ENST00000566808 SPINT4Q6UDR6 99 aa5.41□□□□□ -1.54
CDH3-205ENST00000566808 BRK1Q8WUW1 75 aa5.41□□□□□ -1.54
CDH3-205ENST00000566808 KRTAP5-8O75690 187 aa5.38□□□□□ -1.55
CDH3-205ENST00000566808 H7BZZ5 65 aa5.33□□□□□ -1.56
CDH3-205ENST00000566808 KRTAP12-1P59990 96 aa5.32□□□□□ -1.56
CDH3-205ENST00000566808 KRTAP5-2Q701N4 177 aa5.3□□□□□ -1.56
CDH3-205ENST00000566808 TNP1P09430 55 aa5.28□□□□□ -1.56
CDH3-205ENST00000566808 KRTAP12-3P60328 96 aa5.27□□□□□ -1.57
CDH3-205ENST00000566808 SPATA8Q6RVD6 105 aa5.27□□□□□ -1.57
CDH3-205ENST00000566808 KTN1-AS1Q86SY8 53 aa5.23□□□□□ -1.57
CDH3-205ENST00000566808 KRTAP9-9Q9BYP9 154 aa5.22□□□□□ -1.57
CDH3-205ENST00000566808 Q1T7F1 81 aa5.21□□□□□ -1.58
CDH3-205ENST00000566808 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.58
CDH3-205ENST00000566808 A0A1B0GU33 70 aa5.12□□□□□ -1.59
CDH3-205ENST00000566808 H3BS24 57 aa5.12□□□□□ -1.59
CDH3-205ENST00000566808 SNURFQ9Y675 71 aa5.12□□□□□ -1.59
CDH3-205ENST00000566808 SPANXA2-OT1Q8N9U9 137 aa5.06□□□□□ -1.6
CDH3-205ENST00000566808 MT1AP04731 61 aa5.02□□□□□ -1.61
CDH3-205ENST00000566808 KRTAP6-1Q3LI64 71 aa5.01□□□□□ -1.61
CDH3-205ENST00000566808 PSPHP1O15172 72 aa4.98□□□□□ -1.61
CDH3-205ENST00000566808 KRTAP19-4Q3LI73 84 aa4.95□□□□□ -1.62
CDH3-205ENST00000566808 COA5Q86WW8 74 aa4.95□□□□□ -1.62
CDH3-205ENST00000566808 CDC42SE1Q9NRR8 79 aa4.95□□□□□ -1.62
CDH3-205ENST00000566808 A8MU10 97 aa4.93□□□□□ -1.62
CDH3-205ENST00000566808 KRTAP6-2Q3LI66 62 aa4.93□□□□□ -1.62
CDH3-205ENST00000566808 KRTAP9-4Q9BYQ2 154 aa4.9□□□□□ -1.63
CDH3-205ENST00000566808 A6NED7 52 aa4.87□□□□□ -1.63
CDH3-205ENST00000566808 KRTAP5-1Q6L8H4 278 aa4.87□□□□□ -1.63
CDH3-205ENST00000566808 PRR15LQ9BU68 103 aa4.87□□□□□ -1.63
CDH3-205ENST00000566808 KRTAP25-1Q3LHN0 102 aa4.79□□□□□ -1.64
CDH3-205ENST00000566808 LINC01558Q9Y6Z2 57 aa4.79□□□□□ -1.64
CDH3-205ENST00000566808 LCE3CQ5T5A8 94 aa4.77□□□□□ -1.65
CDH3-205ENST00000566808 A0A1B0GU69 56 aa4.72□□□□□ -1.65
CDH3-205ENST00000566808 KRTAP4-12Q9BQ66 201 aa4.72□□□□□ -1.65
CDH3-205ENST00000566808 KRTAP15-1Q3LI76 137 aa4.68□□□□□ -1.66
CDH3-205ENST00000566808 PRAC1Q96KF2 57 aa4.68□□□□□ -1.66
CDH3-205ENST00000566808 A0A0A0MQY5 61 aa4.63□□□□□ -1.67
CDH3-205ENST00000566808 MT3P25713 68 aa4.61□□□□□ -1.67
CDH3-205ENST00000566808 ROMO1P60602 79 aa4.54□□□□□ -1.68
CDH3-205ENST00000566808 KRTAP9-6A8MVA2 160 aa4.52□□□□□ -1.69
CDH3-205ENST00000566808 UQCR11O14957 56 aa4.47□□□□□ -1.69
CDH3-205ENST00000566808 MIR22HGQ0VDD5 57 aa4.47□□□□□ -1.69
CDH3-205ENST00000566808 KRTAP23-1A1A580 65 aa4.42□□□□□ -1.7
CDH3-205ENST00000566808 LCE1EQ5T753 118 aa4.42□□□□□ -1.7
CDH3-205ENST00000566808 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
CDH3-205ENST00000566808 K7ERS5 55 aa4.29□□□□□ -1.72
CDH3-205ENST00000566808 LUZP6Q538Z0 58 aa4.2□□□□□ -1.74
CDH3-205ENST00000566808 NDUFAF8A1L188 74 aa4.19□□□□□ -1.74
CDH3-205ENST00000566808 LCE1BQ5T7P3 118 aa4.19□□□□□ -1.74
CDH3-205ENST00000566808 LCE1CQ5T751 118 aa4.1□□□□□ -1.75
CDH3-205ENST00000566808 KRTAP5-11Q6L8G4 156 aa3.92□□□□□ -1.78
CDH3-205ENST00000566808 LCE1FQ5T754 118 aa3.85□□□□□ -1.79
CDH3-205ENST00000566808 PHGR1C9JFL3 82 aa3.82□□□□□ -1.8
CDH3-205ENST00000566808 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.83
CDH3-205ENST00000566808 INE1O15225 51 aa3.59□□□□□ -1.83
CDH3-205ENST00000566808 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
CDH3-205ENST00000566808 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
CDH3-205ENST00000566808 MUC19Q7Z5P9 8384 aa3.25□□□□□ -1.89
CDH3-205ENST00000566808 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
CDH3-205ENST00000566808 LCE3EQ5T5B0 92 aa2.97□□□□□ -1.93
CDH3-205ENST00000566808 KRTAP21-1Q3LI58 79 aa2.93□□□□□ -1.94
CDH3-205ENST00000566808 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
CDH3-205ENST00000566808 PRM1P04553 51 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 66.6 ms