RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DSTQ03001 7570 aaKnown RBP3.53□□□□□ -1.84
VPS35-206ENST00000565228 KRTAP19-7Q3SYF9 63 aa3.51□□□□□ -1.85
VPS35-206ENST00000565228 C10orf95Q9H7T3 257 aa3.51□□□□□ -1.85
VPS35-206ENST00000565228 SMIM26A0A096LP01 95 aa3.49□□□□□ -1.85
VPS35-206ENST00000565228 PRR15LQ9BU68 103 aa3.47□□□□□ -1.85
VPS35-206ENST00000565228 SPRR2DP22532 72 aa3.46□□□□□ -1.86
VPS35-206ENST00000565228 MT1EP04732 61 aa3.45□□□□□ -1.86
VPS35-206ENST00000565228 AHNAK2Q8IVF2 5795 aa3.45□□□□□ -1.86
VPS35-206ENST00000565228 PCP4P48539 62 aa3.43□□□□□ -1.86
VPS35-206ENST00000565228 HMCN1Q96RW7 5635 aa3.42□□□□□ -1.86
VPS35-206ENST00000565228 PSPHP1O15172 72 aa3.42□□□□□ -1.86
VPS35-206ENST00000565228 Q1T7F1 81 aa3.42□□□□□ -1.86
VPS35-206ENST00000565228 KRTAP19-5Q3LI72 72 aa3.42□□□□□ -1.86
VPS35-206ENST00000565228 UQCR11O14957 56 aa3.4□□□□□ -1.87
VPS35-206ENST00000565228 LCE3AQ5TA76 89 aa3.4□□□□□ -1.87
VPS35-206ENST00000565228 MIR22HGQ0VDD5 57 aa3.37□□□□□ -1.87
VPS35-206ENST00000565228 KRTAP19-3Q7Z4W3 81 aa3.35□□□□□ -1.87
VPS35-206ENST00000565228 TNP1P09430 55 aa3.32□□□□□ -1.88
VPS35-206ENST00000565228 RPS28P62857 69 aaKnown RBP3.32□□□□□ -1.88
VPS35-206ENST00000565228 V9GYY9 64 aa3.32□□□□□ -1.88
VPS35-206ENST00000565228 MT1LQ93083 61 aa3.31□□□□□ -1.88
VPS35-206ENST00000565228 KRTAP5-10Q6L8G5 202 aa3.3□□□□□ -1.88
VPS35-206ENST00000565228 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
VPS35-206ENST00000565228 KRTAP4-3Q9BYR4 195 aa3.27□□□□□ -1.89
VPS35-206ENST00000565228 MT1MQ8N339 61 aa3.26□□□□□ -1.89
VPS35-206ENST00000565228 MT1GP13640 62 aa3.25□□□□□ -1.89
VPS35-206ENST00000565228 A6NED7 52 aa3.24□□□□□ -1.89
VPS35-206ENST00000565228 KRTAP5-7Q6L8G8 165 aa3.23□□□□□ -1.89
VPS35-206ENST00000565228 KRTAP12-3P60328 96 aa3.21□□□□□ -1.9
VPS35-206ENST00000565228 KRTAP25-1Q3LHN0 102 aa3.19□□□□□ -1.9
VPS35-206ENST00000565228 KRTAP5-11Q6L8G4 156 aa3.15□□□□□ -1.91
VPS35-206ENST00000565228 K7ERS5 55 aa3.14□□□□□ -1.91
VPS35-206ENST00000565228 CDC42SE1Q9NRR8 79 aa3.14□□□□□ -1.91
VPS35-206ENST00000565228 PP632Q6XCG6 107 aa3.13□□□□□ -1.91
VPS35-206ENST00000565228 ROMO1P60602 79 aa3.08□□□□□ -1.92
VPS35-206ENST00000565228 SPRR5A0A1B0GTR4 108 aa3.07□□□□□ -1.92
VPS35-206ENST00000565228 MT4P47944 62 aa3.07□□□□□ -1.92
VPS35-206ENST00000565228 KRTAP5-4Q6L8H1 288 aa3.06□□□□□ -1.92
VPS35-206ENST00000565228 LCE1EQ5T753 118 aa3.05□□□□□ -1.92
VPS35-206ENST00000565228 AHNAKQ09666 5890 aaKnown RBP3.03□□□□□ -1.92
VPS35-206ENST00000565228 KRTAP5-5Q701N2 237 aaPredicted RBP3.02□□□□□ -1.93
VPS35-206ENST00000565228 LCE3CQ5T5A8 94 aa2.98□□□□□ -1.93
VPS35-206ENST00000565228 KRTAP9-6A8MVA2 160 aa2.94□□□□□ -1.94
VPS35-206ENST00000565228 SYNE1Q8NF91 8797 aaKnown RBP2.94□□□□□ -1.94
VPS35-206ENST00000565228 MUC5BQ9HC84 5762 aaPredicted RBP2.93□□□□□ -1.94
VPS35-206ENST00000565228 MT3P25713 68 aa2.93□□□□□ -1.94
VPS35-206ENST00000565228 MUC5ACP98088 5654 aa2.92□□□□□ -1.94
VPS35-206ENST00000565228 BRK1Q8WUW1 75 aa2.91□□□□□ -1.94
VPS35-206ENST00000565228 KRTAP20-2Q3LI61 65 aa2.86□□□□□ -1.95
VPS35-206ENST00000565228 KRTAP6-1Q3LI64 71 aa2.82□□□□□ -1.96
VPS35-206ENST00000565228 MT1AP04731 61 aa2.8□□□□□ -1.96
VPS35-206ENST00000565228 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
VPS35-206ENST00000565228 KRTAP12-4P60329 112 aa2.75□□□□□ -1.97
VPS35-206ENST00000565228 PRAC1Q96KF2 57 aa2.73□□□□□ -1.97
VPS35-206ENST00000565228 PMAIP1Q13794 54 aa2.72□□□□□ -1.97
VPS35-206ENST00000565228 KRTAP5-2Q701N4 177 aa2.71□□□□□ -1.98
VPS35-206ENST00000565228 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
VPS35-206ENST00000565228 KRTAP5-8O75690 187 aa2.65□□□□□ -1.99
VPS35-206ENST00000565228 KRTAP6-2Q3LI66 62 aa2.64□□□□□ -1.99
VPS35-206ENST00000565228 PRO0628Q9UI54 55 aa2.61□□□□□ -1.99
VPS35-206ENST00000565228 LCE1FQ5T754 118 aa2.57□□□□□ -2
VPS35-206ENST00000565228 OBSCNQ5VST9 7968 aa2.54□□□□□ -2
VPS35-206ENST00000565228 KTN1-AS1Q86SY8 53 aa2.48□□□□□ -2.01
VPS35-206ENST00000565228 A0A0A0MQY5 61 aa2.42□□□□□ -2.02
VPS35-206ENST00000565228 SVIPQ8NHG7 77 aa2.31□□□□□ -2.04
VPS35-206ENST00000565228 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
VPS35-206ENST00000565228 NDUFAF8A1L188 74 aa2.18□□□□□ -2.06
VPS35-206ENST00000565228 LCE1BQ5T7P3 118 aa2.15□□□□□ -2.07
VPS35-206ENST00000565228 LCE1CQ5T751 118 aa2.13□□□□□ -2.07
VPS35-206ENST00000565228 LCE3DQ9BYE3 92 aa2.13□□□□□ -2.07
VPS35-206ENST00000565228 LUZP6Q538Z0 58 aa2.06□□□□□ -2.08
VPS35-206ENST00000565228 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
VPS35-206ENST00000565228 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
VPS35-206ENST00000565228 MUC19Q7Z5P9 8384 aa1.64□□□□□ -2.15
VPS35-206ENST00000565228 PRM1P04553 51 aa1.63□□□□□ -2.15
VPS35-206ENST00000565228 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
VPS35-206ENST00000565228 INE1O15225 51 aa1.42□□□□□ -2.18
VPS35-206ENST00000565228 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 7.7 ms