RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 C10orf95Q9H7T3 257 aa5.3□□□□□ -1.56
CLN3-213ENST00000565047 MT1MQ8N339 61 aa5.29□□□□□ -1.56
CLN3-213ENST00000565047 LCE3AQ5TA76 89 aa5.26□□□□□ -1.57
CLN3-213ENST00000565047 PP632Q6XCG6 107 aa5.25□□□□□ -1.57
CLN3-213ENST00000565047 UQCR11O14957 56 aa5.22□□□□□ -1.57
CLN3-213ENST00000565047 HMCN1Q96RW7 5635 aa5.21□□□□□ -1.58
CLN3-213ENST00000565047 TNP1P09430 55 aa5.2□□□□□ -1.58
CLN3-213ENST00000565047 LCE1DQ5T752 114 aa5.2□□□□□ -1.58
CLN3-213ENST00000565047 KRTAP4-3Q9BYR4 195 aa5.19□□□□□ -1.58
CLN3-213ENST00000565047 MIR22HGQ0VDD5 57 aa5.16□□□□□ -1.58
CLN3-213ENST00000565047 LCE4AQ5TA78 99 aa5.16□□□□□ -1.58
CLN3-213ENST00000565047 KRTAP5-4Q6L8H1 288 aa5.13□□□□□ -1.59
CLN3-213ENST00000565047 A6NED7 52 aa5.12□□□□□ -1.59
CLN3-213ENST00000565047 MT4P47944 62 aa5.08□□□□□ -1.6
CLN3-213ENST00000565047 AHNAK2Q8IVF2 5795 aa5.07□□□□□ -1.6
CLN3-213ENST00000565047 KRTAP12-3P60328 96 aa5.05□□□□□ -1.6
CLN3-213ENST00000565047 KRTAP4-7Q9BYR0 210 aa5.05□□□□□ -1.6
CLN3-213ENST00000565047 KRTAP4-6Q9BYQ5 205 aa5.01□□□□□ -1.61
CLN3-213ENST00000565047 CDC42SE1Q9NRR8 79 aa4.98□□□□□ -1.61
CLN3-213ENST00000565047 K7ERS5 55 aa4.94□□□□□ -1.62
CLN3-213ENST00000565047 KRTAP5-10Q6L8G5 202 aa4.92□□□□□ -1.62
CLN3-213ENST00000565047 KRTAP5-5Q701N2 237 aaPredicted RBP4.92□□□□□ -1.62
CLN3-213ENST00000565047 KRTAP25-1Q3LHN0 102 aa4.9□□□□□ -1.63
CLN3-213ENST00000565047 BRK1Q8WUW1 75 aa4.85□□□□□ -1.63
CLN3-213ENST00000565047 KRTAP20-2Q3LI61 65 aa4.8□□□□□ -1.64
CLN3-213ENST00000565047 KRTAP5-7Q6L8G8 165 aa4.8□□□□□ -1.64
CLN3-213ENST00000565047 SYNE1Q8NF91 8797 aaKnown RBP4.79□□□□□ -1.64
CLN3-213ENST00000565047 LOC100996750A0A140TA64 210 aa4.79□□□□□ -1.64
CLN3-213ENST00000565047 SPRR5A0A1B0GTR4 108 aa4.78□□□□□ -1.64
CLN3-213ENST00000565047 KRTAP19-4Q3LI73 84 aa4.77□□□□□ -1.65
CLN3-213ENST00000565047 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
CLN3-213ENST00000565047 KRTAP5-3Q6L8H2 238 aa4.75□□□□□ -1.65
CLN3-213ENST00000565047 ROMO1P60602 79 aa4.72□□□□□ -1.65
CLN3-213ENST00000565047 KRTAP15-1Q3LI76 137 aa4.7□□□□□ -1.66
CLN3-213ENST00000565047 KRTAP12-4P60329 112 aa4.69□□□□□ -1.66
CLN3-213ENST00000565047 LCE3CQ5T5A8 94 aa4.66□□□□□ -1.66
CLN3-213ENST00000565047 PMAIP1Q13794 54 aa4.57□□□□□ -1.68
CLN3-213ENST00000565047 PRO0628Q9UI54 55 aa4.56□□□□□ -1.68
CLN3-213ENST00000565047 MT1AP04731 61 aa4.49□□□□□ -1.69
CLN3-213ENST00000565047 KRTAP6-1Q3LI64 71 aa4.49□□□□□ -1.69
CLN3-213ENST00000565047 KRTAP5-2Q701N4 177 aa4.49□□□□□ -1.69
CLN3-213ENST00000565047 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
CLN3-213ENST00000565047 KRTAP4-11Q9BYQ6 195 aa4.4□□□□□ -1.71
CLN3-213ENST00000565047 PRAC1Q96KF2 57 aa4.37□□□□□ -1.71
CLN3-213ENST00000565047 KRTAP9-4Q9BYQ2 154 aa4.37□□□□□ -1.71
CLN3-213ENST00000565047 OBSCNQ5VST9 7968 aa4.3□□□□□ -1.72
CLN3-213ENST00000565047 KRTAP5-8O75690 187 aa4.28□□□□□ -1.72
CLN3-213ENST00000565047 KRTAP6-2Q3LI66 62 aa4.28□□□□□ -1.72
CLN3-213ENST00000565047 KTN1-AS1Q86SY8 53 aa4.27□□□□□ -1.73
CLN3-213ENST00000565047 AHNAKQ09666 5890 aaKnown RBP4.21□□□□□ -1.74
CLN3-213ENST00000565047 MUC5BQ9HC84 5762 aaPredicted RBP4.17□□□□□ -1.74
CLN3-213ENST00000565047 MUC5ACP98088 5654 aa4.17□□□□□ -1.74
CLN3-213ENST00000565047 MT3P25713 68 aa4.1□□□□□ -1.75
CLN3-213ENST00000565047 SVIPQ8NHG7 77 aa4.07□□□□□ -1.76
CLN3-213ENST00000565047 KRTAP5-1Q6L8H4 278 aa4.04□□□□□ -1.76
CLN3-213ENST00000565047 KRTAP9-9Q9BYP9 154 aa3.99□□□□□ -1.77
CLN3-213ENST00000565047 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
CLN3-213ENST00000565047 KRTAP4-2Q9BYR5 136 aa3.64□□□□□ -1.83
CLN3-213ENST00000565047 LCE1CQ5T751 118 aa3.55□□□□□ -1.84
CLN3-213ENST00000565047 LCE1BQ5T7P3 118 aa3.55□□□□□ -1.84
CLN3-213ENST00000565047 LUZP6Q538Z0 58 aa3.53□□□□□ -1.84
CLN3-213ENST00000565047 LCE3DQ9BYE3 92 aa3.32□□□□□ -1.88
CLN3-213ENST00000565047 NDUFAF8A1L188 74 aa3.28□□□□□ -1.88
CLN3-213ENST00000565047 KRTAP4-12Q9BQ66 201 aa3.26□□□□□ -1.89
CLN3-213ENST00000565047 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.25□□□□□ -1.89
CLN3-213ENST00000565047 KRTAP5-11Q6L8G4 156 aa3.21□□□□□ -1.9
CLN3-213ENST00000565047 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
CLN3-213ENST00000565047 LCE3EQ5T5B0 92 aa3.11□□□□□ -1.91
CLN3-213ENST00000565047 KRTAP21-2Q3LI59 83 aa2.99□□□□□ -1.93
CLN3-213ENST00000565047 PHGR1C9JFL3 82 aa2.9□□□□□ -1.95
CLN3-213ENST00000565047 A0A0A0MQY5 61 aa2.75□□□□□ -1.97
CLN3-213ENST00000565047 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
CLN3-213ENST00000565047 MUC19Q7Z5P9 8384 aa2.65□□□□□ -1.98
CLN3-213ENST00000565047 INE1O15225 51 aa2.65□□□□□ -1.99
CLN3-213ENST00000565047 PRM1P04553 51 aa2.47□□□□□ -2.01
CLN3-213ENST00000565047 H3BS24 57 aa2.34□□□□□ -2.03
CLN3-213ENST00000565047 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
CLN3-213ENST00000565047 MUC16Q8WXI7 14507 aa1.87□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 137 ms