RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 KRTAP19-5Q3LI72 72 aa6.64□□□□□ -1.35
RAB40C-206ENST00000561781 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.62□□□□□ -1.35
RAB40C-206ENST00000561781 KRTAP4-8A0A0G2JLE6 195 aa6.44□□□□□ -1.38
RAB40C-206ENST00000561781 KRTAP4-8Q9BYQ9 185 aa6.44□□□□□ -1.38
RAB40C-206ENST00000561781 MUC12Q9UKN1 5478 aa6.41□□□□□ -1.38
RAB40C-206ENST00000561781 KRTAP9-7A8MTY7 169 aa6.4□□□□□ -1.39
RAB40C-206ENST00000561781 KRTAP4-7Q9BYR0 210 aa6.33□□□□□ -1.4
RAB40C-206ENST00000561781 MDN1Q9NU22 5596 aa6.31□□□□□ -1.4
RAB40C-206ENST00000561781 KRTAP19-4Q3LI73 84 aa6.26□□□□□ -1.41
RAB40C-206ENST00000561781 KRTAP6-3Q3LI67 103 aa6.21□□□□□ -1.41
RAB40C-206ENST00000561781 KRTAP12-4P60329 112 aa6.2□□□□□ -1.42
RAB40C-206ENST00000561781 SPRR2FQ96RM1 72 aa6.19□□□□□ -1.42
RAB40C-206ENST00000561781 KRTAP19-7Q3SYF9 63 aa6.16□□□□□ -1.42
RAB40C-206ENST00000561781 KRTAP5-9P26371 169 aa6.14□□□□□ -1.43
RAB40C-206ENST00000561781 NEBP20929 6669 aa6.02□□□□□ -1.45
RAB40C-206ENST00000561781 MT1LQ93083 61 aa6.02□□□□□ -1.45
RAB40C-206ENST00000561781 SPRR2EP22531 72 aa5.96□□□□□ -1.46
RAB40C-206ENST00000561781 SPRR2BP35325 72 aa5.96□□□□□ -1.46
RAB40C-206ENST00000561781 SPRR2AP35326 72 aa5.96□□□□□ -1.46
RAB40C-206ENST00000561781 LCE1AQ5T7P2 110 aa5.93□□□□□ -1.46
RAB40C-206ENST00000561781 MT1EP04732 61 aa5.93□□□□□ -1.46
RAB40C-206ENST00000561781 LOC100996750A0A140TA64 210 aa5.87□□□□□ -1.47
RAB40C-206ENST00000561781 DSTQ03001 7570 aaKnown RBP5.84□□□□□ -1.47
RAB40C-206ENST00000561781 KRTAP19-3Q7Z4W3 81 aa5.76□□□□□ -1.49
RAB40C-206ENST00000561781 MT1GP13640 62 aa5.74□□□□□ -1.49
RAB40C-206ENST00000561781 KRTAP4-3Q9BYR4 195 aa5.74□□□□□ -1.49
RAB40C-206ENST00000561781 SPRR2DP22532 72 aa5.73□□□□□ -1.49
RAB40C-206ENST00000561781 LCE5AQ5TCM9 118 aa5.72□□□□□ -1.49
RAB40C-206ENST00000561781 KRTAP2-2Q9BYT5 123 aa5.63□□□□□ -1.51
RAB40C-206ENST00000561781 MT1MQ8N339 61 aa5.61□□□□□ -1.51
RAB40C-206ENST00000561781 KRTAP20-1Q3LI63 56 aa5.59□□□□□ -1.51
RAB40C-206ENST00000561781 PRM1P04553 51 aa5.59□□□□□ -1.51
RAB40C-206ENST00000561781 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
RAB40C-206ENST00000561781 MT1AP04731 61 aa5.53□□□□□ -1.52
RAB40C-206ENST00000561781 KRTAP4-9Q9BYQ8 210 aa5.53□□□□□ -1.52
RAB40C-206ENST00000561781 KRTAP5-5Q701N2 237 aaPredicted RBP5.46□□□□□ -1.54
RAB40C-206ENST00000561781 LCE3EQ5T5B0 92 aa5.44□□□□□ -1.54
RAB40C-206ENST00000561781 LCE3DQ9BYE3 92 aa5.42□□□□□ -1.54
RAB40C-206ENST00000561781 SYNE1Q8NF91 8797 aaKnown RBP5.34□□□□□ -1.55
RAB40C-206ENST00000561781 KRTAP6-1Q3LI64 71 aa5.15□□□□□ -1.58
RAB40C-206ENST00000561781 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
RAB40C-206ENST00000561781 MT4P47944 62 aa5.08□□□□□ -1.6
RAB40C-206ENST00000561781 HMCN1Q96RW7 5635 aa5.05□□□□□ -1.6
RAB40C-206ENST00000561781 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
RAB40C-206ENST00000561781 LCE1DQ5T752 114 aa5.03□□□□□ -1.6
RAB40C-206ENST00000561781 KRTAP5-4Q6L8H1 288 aa5.02□□□□□ -1.61
RAB40C-206ENST00000561781 KRTAP4-6Q9BYQ5 205 aa4.99□□□□□ -1.61
RAB40C-206ENST00000561781 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
RAB40C-206ENST00000561781 KRTAP20-2Q3LI61 65 aa4.77□□□□□ -1.65
RAB40C-206ENST00000561781 OBSCNQ5VST9 7968 aa4.71□□□□□ -1.66
RAB40C-206ENST00000561781 KRTAP9-4Q9BYQ2 154 aa4.66□□□□□ -1.66
RAB40C-206ENST00000561781 AHNAK2Q8IVF2 5795 aa4.6□□□□□ -1.67
RAB40C-206ENST00000561781 KRTAP5-3Q6L8H2 238 aa4.59□□□□□ -1.67
RAB40C-206ENST00000561781 GPR98Q8WXG9 6306 aa4.51□□□□□ -1.69
RAB40C-206ENST00000561781 KRTAP5-2Q701N4 177 aa4.47□□□□□ -1.69
RAB40C-206ENST00000561781 MT3P25713 68 aa4.45□□□□□ -1.7
RAB40C-206ENST00000561781 KRTAP5-10Q6L8G5 202 aa4.38□□□□□ -1.71
RAB40C-206ENST00000561781 LCE1FQ5T754 118 aa4.27□□□□□ -1.73
RAB40C-206ENST00000561781 KRTAP4-11Q9BYQ6 195 aa4.24□□□□□ -1.73
RAB40C-206ENST00000561781 KRTAP5-8O75690 187 aa4.1□□□□□ -1.75
RAB40C-206ENST00000561781 KRTAP5-7Q6L8G8 165 aa4.07□□□□□ -1.76
RAB40C-206ENST00000561781 KRTAP5-1Q6L8H4 278 aa3.99□□□□□ -1.77
RAB40C-206ENST00000561781 MUC5ACP98088 5654 aa3.93□□□□□ -1.78
RAB40C-206ENST00000561781 MUC5BQ9HC84 5762 aaPredicted RBP3.8□□□□□ -1.8
RAB40C-206ENST00000561781 LCE1BQ5T7P3 118 aa3.79□□□□□ -1.8
RAB40C-206ENST00000561781 KRTAP9-9Q9BYP9 154 aa3.74□□□□□ -1.81
RAB40C-206ENST00000561781 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
RAB40C-206ENST00000561781 KRTAP21-1Q3LI58 79 aa3.65□□□□□ -1.83
RAB40C-206ENST00000561781 LCE1CQ5T751 118 aa3.61□□□□□ -1.83
RAB40C-206ENST00000561781 AHNAKQ09666 5890 aaKnown RBP3.56□□□□□ -1.84
RAB40C-206ENST00000561781 MUC19Q7Z5P9 8384 aa3.41□□□□□ -1.86
RAB40C-206ENST00000561781 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.87
RAB40C-206ENST00000561781 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.3□□□□□ -1.88
RAB40C-206ENST00000561781 KRTAP21-2Q3LI59 83 aa3.28□□□□□ -1.88
RAB40C-206ENST00000561781 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
RAB40C-206ENST00000561781 KRTAP4-4Q9BYR3 166 aa3.09□□□□□ -1.92
RAB40C-206ENST00000561781 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
RAB40C-206ENST00000561781 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 41 ms