RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 KRTAP19-7Q3SYF9 63 aa5.37□□□□□ -1.55
USP3-221ENST00000561442 KRTAP20-1Q3LI63 56 aa5.34□□□□□ -1.55
USP3-221ENST00000561442 LCE3AQ5TA76 89 aa5.34□□□□□ -1.55
USP3-221ENST00000561442 KRTAP19-5Q3LI72 72 aa5.33□□□□□ -1.56
USP3-221ENST00000561442 MT1EP04732 61 aa5.32□□□□□ -1.56
USP3-221ENST00000561442 SPRR2DP22532 72 aa5.3□□□□□ -1.56
USP3-221ENST00000561442 KRTAP15-1Q3LI76 137 aa5.27□□□□□ -1.57
USP3-221ENST00000561442 KRTAP2-3P0C7H8 128 aa5.24□□□□□ -1.57
USP3-221ENST00000561442 KRTAP2-4Q9BYR9 128 aa5.24□□□□□ -1.57
USP3-221ENST00000561442 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.58
USP3-221ENST00000561442 LCE5AQ5TCM9 118 aa5.17□□□□□ -1.58
USP3-221ENST00000561442 LCE3BQ5TA77 95 aa5.13□□□□□ -1.59
USP3-221ENST00000561442 MT1LQ93083 61 aa5.13□□□□□ -1.59
USP3-221ENST00000561442 KRTAP12-3P60328 96 aa5.12□□□□□ -1.59
USP3-221ENST00000561442 MT1GP13640 62 aa5.1□□□□□ -1.59
USP3-221ENST00000561442 KRTAP2-2Q9BYT5 123 aa5.09□□□□□ -1.59
USP3-221ENST00000561442 KRTAP2-1Q9BYU5 128 aa5.09□□□□□ -1.59
USP3-221ENST00000561442 MT1MQ8N339 61 aa5.04□□□□□ -1.6
USP3-221ENST00000561442 DSTQ03001 7570 aaKnown RBP5□□□□□ -1.61
USP3-221ENST00000561442 LUZP6Q538Z0 58 aa4.98□□□□□ -1.61
USP3-221ENST00000561442 SPRR5A0A1B0GTR4 108 aa4.97□□□□□ -1.61
USP3-221ENST00000561442 KRTAP4-3Q9BYR4 195 aa4.96□□□□□ -1.62
USP3-221ENST00000561442 NDUFAF8A1L188 74 aa4.95□□□□□ -1.62
USP3-221ENST00000561442 KRTAP4-7Q9BYR0 210 aa4.92□□□□□ -1.62
USP3-221ENST00000561442 H3BS24 57 aa4.85□□□□□ -1.63
USP3-221ENST00000561442 KRTAP19-4Q3LI73 84 aa4.79□□□□□ -1.64
USP3-221ENST00000561442 KRTAP4-9Q9BYQ8 210 aa4.73□□□□□ -1.65
USP3-221ENST00000561442 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
USP3-221ENST00000561442 LCE4AQ5TA78 99 aa4.67□□□□□ -1.66
USP3-221ENST00000561442 LOC100996750A0A140TA64 210 aa4.65□□□□□ -1.67
USP3-221ENST00000561442 MT4P47944 62 aa4.64□□□□□ -1.67
USP3-221ENST00000561442 LCE1DQ5T752 114 aa4.63□□□□□ -1.67
USP3-221ENST00000561442 KRTAP5-4Q6L8H1 288 aa4.63□□□□□ -1.67
USP3-221ENST00000561442 HMCN1Q96RW7 5635 aa4.61□□□□□ -1.67
USP3-221ENST00000561442 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
USP3-221ENST00000561442 A0A0A0MQY5 61 aa4.56□□□□□ -1.68
USP3-221ENST00000561442 KRTAP4-6Q9BYQ5 205 aa4.52□□□□□ -1.69
USP3-221ENST00000561442 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
USP3-221ENST00000561442 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
USP3-221ENST00000561442 GPR98Q8WXG9 6306 aa4.42□□□□□ -1.7
USP3-221ENST00000561442 KRTAP12-4P60329 112 aa4.4□□□□□ -1.71
USP3-221ENST00000561442 KRTAP20-2Q3LI61 65 aa4.38□□□□□ -1.71
USP3-221ENST00000561442 AHNAK2Q8IVF2 5795 aa4.35□□□□□ -1.71
USP3-221ENST00000561442 MT1AP04731 61 aa4.35□□□□□ -1.71
USP3-221ENST00000561442 KRTAP6-1Q3LI64 71 aa4.34□□□□□ -1.71
USP3-221ENST00000561442 INE1O15225 51 aa4.25□□□□□ -1.73
USP3-221ENST00000561442 KRTAP5-3Q6L8H2 238 aa4.22□□□□□ -1.73
USP3-221ENST00000561442 KRTAP9-4Q9BYQ2 154 aa4.17□□□□□ -1.74
USP3-221ENST00000561442 KRTAP5-10Q6L8G5 202 aa4.15□□□□□ -1.75
USP3-221ENST00000561442 KRTAP5-2Q701N4 177 aa4.11□□□□□ -1.75
USP3-221ENST00000561442 KRTAP6-2Q3LI66 62 aa4.09□□□□□ -1.75
USP3-221ENST00000561442 MT3P25713 68 aa3.96□□□□□ -1.78
USP3-221ENST00000561442 KRTAP5-7Q6L8G8 165 aa3.94□□□□□ -1.78
USP3-221ENST00000561442 KRTAP4-11Q9BYQ6 195 aa3.92□□□□□ -1.78
USP3-221ENST00000561442 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
USP3-221ENST00000561442 KRTAP5-8O75690 187 aa3.78□□□□□ -1.8
USP3-221ENST00000561442 MUC5ACP98088 5654 aa3.66□□□□□ -1.82
USP3-221ENST00000561442 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
USP3-221ENST00000561442 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
USP3-221ENST00000561442 LCE1EQ5T753 118 aa3.55□□□□□ -1.84
USP3-221ENST00000561442 KRTAP9-9Q9BYP9 154 aa3.55□□□□□ -1.84
USP3-221ENST00000561442 AHNAKQ09666 5890 aaKnown RBP3.51□□□□□ -1.85
USP3-221ENST00000561442 LCE3DQ9BYE3 92 aa3.5□□□□□ -1.85
USP3-221ENST00000561442 LCE3EQ5T5B0 92 aa3.46□□□□□ -1.86
USP3-221ENST00000561442 KRTAP4-12Q9BQ66 201 aa3.45□□□□□ -1.86
USP3-221ENST00000561442 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.87
USP3-221ENST00000561442 KRTAP4-2Q9BYR5 136 aa3.36□□□□□ -1.87
USP3-221ENST00000561442 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
USP3-221ENST00000561442 PRM1P04553 51 aa3.08□□□□□ -1.92
USP3-221ENST00000561442 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.02□□□□□ -1.93
USP3-221ENST00000561442 KRTAP5-11Q6L8G4 156 aa2.97□□□□□ -1.93
USP3-221ENST00000561442 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
USP3-221ENST00000561442 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
USP3-221ENST00000561442 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
USP3-221ENST00000561442 PHGR1C9JFL3 82 aa2.56□□□□□ -2
USP3-221ENST00000561442 MUC19Q7Z5P9 8384 aa2.35□□□□□ -2.03
USP3-221ENST00000561442 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
USP3-221ENST00000561442 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 13.2 ms