RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 KRTAP2-2Q9BYT5 123 aa4.88□□□□□ -1.63
CTDSPL2-209ENST00000560620 KRTAP2-1Q9BYU5 128 aa4.88□□□□□ -1.63
CTDSPL2-209ENST00000560620 KRTAP19-7Q3SYF9 63 aa4.84□□□□□ -1.63
CTDSPL2-209ENST00000560620 UQCR11O14957 56 aa4.83□□□□□ -1.64
CTDSPL2-209ENST00000560620 KRTAP4-9Q9BYQ8 210 aa4.81□□□□□ -1.64
CTDSPL2-209ENST00000560620 MT1EP04732 61 aa4.8□□□□□ -1.64
CTDSPL2-209ENST00000560620 TNP1P09430 55 aa4.8□□□□□ -1.64
CTDSPL2-209ENST00000560620 KRTAP4-2Q9BYR5 136 aa4.8□□□□□ -1.64
CTDSPL2-209ENST00000560620 KRTAP19-5Q3LI72 72 aa4.78□□□□□ -1.64
CTDSPL2-209ENST00000560620 C10orf95Q9H7T3 257 aa4.78□□□□□ -1.64
CTDSPL2-209ENST00000560620 KRTAP19-3Q7Z4W3 81 aa4.77□□□□□ -1.65
CTDSPL2-209ENST00000560620 PSPHP1O15172 72 aa4.76□□□□□ -1.65
CTDSPL2-209ENST00000560620 CDC42SE1Q9NRR8 79 aa4.75□□□□□ -1.65
CTDSPL2-209ENST00000560620 LCE5AQ5TCM9 118 aa4.74□□□□□ -1.65
CTDSPL2-209ENST00000560620 A0A0A0MQY5 61 aa4.72□□□□□ -1.65
CTDSPL2-209ENST00000560620 MIR22HGQ0VDD5 57 aa4.72□□□□□ -1.65
CTDSPL2-209ENST00000560620 LCE3AQ5TA76 89 aa4.72□□□□□ -1.65
CTDSPL2-209ENST00000560620 DSTQ03001 7570 aaKnown RBP4.7□□□□□ -1.66
CTDSPL2-209ENST00000560620 A6NED7 52 aa4.67□□□□□ -1.66
CTDSPL2-209ENST00000560620 K7ERS5 55 aa4.67□□□□□ -1.66
CTDSPL2-209ENST00000560620 PP632Q6XCG6 107 aa4.67□□□□□ -1.66
CTDSPL2-209ENST00000560620 MT1GP13640 62 aa4.66□□□□□ -1.66
CTDSPL2-209ENST00000560620 KRTAP19-4Q3LI73 84 aa4.62□□□□□ -1.67
CTDSPL2-209ENST00000560620 MT1LQ93083 61 aa4.61□□□□□ -1.67
CTDSPL2-209ENST00000560620 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
CTDSPL2-209ENST00000560620 MT1MQ8N339 61 aa4.58□□□□□ -1.68
CTDSPL2-209ENST00000560620 KRTAP25-1Q3LHN0 102 aa4.55□□□□□ -1.68
CTDSPL2-209ENST00000560620 KRTAP23-1A1A580 65 aa4.54□□□□□ -1.68
CTDSPL2-209ENST00000560620 KRTAP12-3P60328 96 aa4.54□□□□□ -1.68
CTDSPL2-209ENST00000560620 LCE4AQ5TA78 99 aa4.53□□□□□ -1.68
CTDSPL2-209ENST00000560620 PRAC1Q96KF2 57 aa4.52□□□□□ -1.69
CTDSPL2-209ENST00000560620 KRTAP4-3Q9BYR4 195 aa4.49□□□□□ -1.69
CTDSPL2-209ENST00000560620 KRTAP5-3Q6L8H2 238 aa4.44□□□□□ -1.7
CTDSPL2-209ENST00000560620 ROMO1P60602 79 aa4.42□□□□□ -1.7
CTDSPL2-209ENST00000560620 MT4P47944 62 aa4.38□□□□□ -1.71
CTDSPL2-209ENST00000560620 HMCN1Q96RW7 5635 aa4.29□□□□□ -1.72
CTDSPL2-209ENST00000560620 KRTAP5-4Q6L8H1 288 aa4.28□□□□□ -1.72
CTDSPL2-209ENST00000560620 KRTAP15-1Q3LI76 137 aa4.27□□□□□ -1.73
CTDSPL2-209ENST00000560620 GPR98Q8WXG9 6306 aa4.22□□□□□ -1.73
CTDSPL2-209ENST00000560620 LUZP6Q538Z0 58 aa4.18□□□□□ -1.74
CTDSPL2-209ENST00000560620 LCE3CQ5T5A8 94 aa4.18□□□□□ -1.74
CTDSPL2-209ENST00000560620 KRTAP5-5Q701N2 237 aaPredicted RBP4.15□□□□□ -1.75
CTDSPL2-209ENST00000560620 KRTAP12-4P60329 112 aa4.11□□□□□ -1.75
CTDSPL2-209ENST00000560620 NDUFAF8A1L188 74 aa4.09□□□□□ -1.75
CTDSPL2-209ENST00000560620 AHNAK2Q8IVF2 5795 aa4.08□□□□□ -1.76
CTDSPL2-209ENST00000560620 KRTAP20-2Q3LI61 65 aa4.07□□□□□ -1.76
CTDSPL2-209ENST00000560620 SPRR5A0A1B0GTR4 108 aa4.04□□□□□ -1.76
CTDSPL2-209ENST00000560620 KRTAP5-10Q6L8G5 202 aa3.98□□□□□ -1.77
CTDSPL2-209ENST00000560620 MT1AP04731 61 aa3.92□□□□□ -1.78
CTDSPL2-209ENST00000560620 SYNE1Q8NF91 8797 aaKnown RBP3.92□□□□□ -1.78
CTDSPL2-209ENST00000560620 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
CTDSPL2-209ENST00000560620 KRTAP6-1Q3LI64 71 aa3.9□□□□□ -1.79
CTDSPL2-209ENST00000560620 KRTAP5-7Q6L8G8 165 aa3.82□□□□□ -1.8
CTDSPL2-209ENST00000560620 KRTAP5-2Q701N4 177 aa3.75□□□□□ -1.81
CTDSPL2-209ENST00000560620 KRTAP6-2Q3LI66 62 aa3.73□□□□□ -1.81
CTDSPL2-209ENST00000560620 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
CTDSPL2-209ENST00000560620 MT3P25713 68 aa3.61□□□□□ -1.83
CTDSPL2-209ENST00000560620 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
CTDSPL2-209ENST00000560620 INE1O15225 51 aa3.51□□□□□ -1.85
CTDSPL2-209ENST00000560620 KRTAP5-1Q6L8H4 278 aa3.36□□□□□ -1.87
CTDSPL2-209ENST00000560620 MUC5BQ9HC84 5762 aaPredicted RBP3.34□□□□□ -1.87
CTDSPL2-209ENST00000560620 MUC5ACP98088 5654 aa3.34□□□□□ -1.88
CTDSPL2-209ENST00000560620 AHNAKQ09666 5890 aaKnown RBP3.33□□□□□ -1.88
CTDSPL2-209ENST00000560620 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
CTDSPL2-209ENST00000560620 LCE1EQ5T753 118 aa3.26□□□□□ -1.89
CTDSPL2-209ENST00000560620 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
CTDSPL2-209ENST00000560620 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
CTDSPL2-209ENST00000560620 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
CTDSPL2-209ENST00000560620 LCE1CQ5T751 118 aa3.03□□□□□ -1.92
CTDSPL2-209ENST00000560620 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
CTDSPL2-209ENST00000560620 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
CTDSPL2-209ENST00000560620 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
CTDSPL2-209ENST00000560620 KRTAP21-2Q3LI59 83 aa2.54□□□□□ -2
CTDSPL2-209ENST00000560620 PHGR1C9JFL3 82 aa2.37□□□□□ -2.03
CTDSPL2-209ENST00000560620 PRM1P04553 51 aa2.21□□□□□ -2.06
CTDSPL2-209ENST00000560620 MUC19Q7Z5P9 8384 aa2.18□□□□□ -2.06
CTDSPL2-209ENST00000560620 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
CTDSPL2-209ENST00000560620 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 10.7 ms