RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445		A8MU10	97 aa		5.15	□□□□□ -1.59
TPM1-223	ENST00000560445	MT1G	P13640	62 aa		5.14	□□□□□ -1.59
TPM1-223	ENST00000560445	TNP1	P09430	55 aa		5.12	□□□□□ -1.59
TPM1-223	ENST00000560445	KRTAP19-5	Q3LI72	72 aa		5.12	□□□□□ -1.59
TPM1-223	ENST00000560445	DST	Q03001	7570 aa	Known RBP	5.09	□□□□□ -1.59
TPM1-223	ENST00000560445	LINC01558	Q9Y6Z2	57 aa		5.08	□□□□□ -1.6
TPM1-223	ENST00000560445	GPR98	Q8WXG9	6306 aa		5.06	□□□□□ -1.6
TPM1-223	ENST00000560445	TMEM258	P61165	79 aa		5.05	□□□□□ -1.6
TPM1-223	ENST00000560445	UQCR11	O14957	56 aa		5.01	□□□□□ -1.61
TPM1-223	ENST00000560445	C10orf95	Q9H7T3	257 aa		5.01	□□□□□ -1.61
TPM1-223	ENST00000560445	MT1M	Q8N339	61 aa		4.99	□□□□□ -1.61
TPM1-223	ENST00000560445	MT1L	Q93083	61 aa		4.99	□□□□□ -1.61
TPM1-223	ENST00000560445	LCE3A	Q5TA76	89 aa		4.98	□□□□□ -1.61
TPM1-223	ENST00000560445	KRTAP15-1	Q3LI76	137 aa		4.96	□□□□□ -1.62
TPM1-223	ENST00000560445		K7ERS5	55 aa		4.88	□□□□□ -1.63
TPM1-223	ENST00000560445	MIR22HG	Q0VDD5	57 aa		4.88	□□□□□ -1.63
TPM1-223	ENST00000560445	MT4	P47944	62 aa		4.85	□□□□□ -1.63
TPM1-223	ENST00000560445	KRTAP12-3	P60328	96 aa		4.85	□□□□□ -1.63
TPM1-223	ENST00000560445		V9GYY9	64 aa		4.85	□□□□□ -1.63
TPM1-223	ENST00000560445	HMCN1	Q96RW7	5635 aa		4.85	□□□□□ -1.63
TPM1-223	ENST00000560445	KRTAP25-1	Q3LHN0	102 aa		4.81	□□□□□ -1.64
TPM1-223	ENST00000560445	KRTAP5-4	Q6L8H1	288 aa		4.81	□□□□□ -1.64
TPM1-223	ENST00000560445	KRTAP4-3	Q9BYR4	195 aa		4.78	□□□□□ -1.64
TPM1-223	ENST00000560445	KRTAP23-1	A1A580	65 aa		4.76	□□□□□ -1.65
TPM1-223	ENST00000560445	PSPHP1	O15172	72 aa		4.76	□□□□□ -1.65
TPM1-223	ENST00000560445		Q1T7F1	81 aa		4.74	□□□□□ -1.65
TPM1-223	ENST00000560445	AHNAK2	Q8IVF2	5795 aa		4.69	□□□□□ -1.66
TPM1-223	ENST00000560445		A6NED7	52 aa		4.64	□□□□□ -1.67
TPM1-223	ENST00000560445	KRTAP12-4	P60329	112 aa		4.6	□□□□□ -1.67
TPM1-223	ENST00000560445	KRTAP5-10	Q6L8G5	202 aa		4.6	□□□□□ -1.67
TPM1-223	ENST00000560445	SPRR5	A0A1B0GTR4	108 aa		4.59	□□□□□ -1.67
TPM1-223	ENST00000560445	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.57	□□□□□ -1.68
TPM1-223	ENST00000560445	CDC42SE1	Q9NRR8	79 aa		4.56	□□□□□ -1.68
TPM1-223	ENST00000560445	KRTAP20-2	Q3LI61	65 aa		4.54	□□□□□ -1.68
TPM1-223	ENST00000560445	RPS28	P62857	69 aa	Known RBP	4.5	□□□□□ -1.69
TPM1-223	ENST00000560445	KRTAP5-7	Q6L8G8	165 aa		4.47	□□□□□ -1.69
TPM1-223	ENST00000560445	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.47	□□□□□ -1.69
TPM1-223	ENST00000560445	ROMO1	P60602	79 aa		4.46	□□□□□ -1.7
TPM1-223	ENST00000560445	LCE3C	Q5T5A8	94 aa		4.45	□□□□□ -1.7
TPM1-223	ENST00000560445	PCP4	P48539	62 aa		4.38	□□□□□ -1.71
TPM1-223	ENST00000560445	KRTAP5-11	Q6L8G4	156 aa		4.37	□□□□□ -1.71
TPM1-223	ENST00000560445	MT1A	P04731	61 aa		4.28	□□□□□ -1.72
TPM1-223	ENST00000560445	SYNE1	Q8NF91	8797 aa	Known RBP	4.26	□□□□□ -1.73
TPM1-223	ENST00000560445	KRTAP5-2	Q701N4	177 aa		4.2	□□□□□ -1.74
TPM1-223	ENST00000560445	KRTAP6-1	Q3LI64	71 aa		4.19	□□□□□ -1.74
TPM1-223	ENST00000560445	LCE1E	Q5T753	118 aa		4.11	□□□□□ -1.75
TPM1-223	ENST00000560445	KRTAP9-6	A8MVA2	160 aa		4.09	□□□□□ -1.75
TPM1-223	ENST00000560445	KRTAP6-2	Q3LI66	62 aa		4.05	□□□□□ -1.76
TPM1-223	ENST00000560445	KRTAP5-8	O75690	187 aa		3.99	□□□□□ -1.77
TPM1-223	ENST00000560445	MT3	P25713	68 aa		3.96	□□□□□ -1.78
TPM1-223	ENST00000560445	BRK1	Q8WUW1	75 aa		3.96	□□□□□ -1.78
TPM1-223	ENST00000560445	AHNAK	Q09666	5890 aa	Known RBP	3.93	□□□□□ -1.78
TPM1-223	ENST00000560445	MUC5AC	P98088	5654 aa		3.91	□□□□□ -1.78
TPM1-223	ENST00000560445	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.87	□□□□□ -1.79
TPM1-223	ENST00000560445	KRTAP5-1	Q6L8H4	278 aa		3.86	□□□□□ -1.79
TPM1-223	ENST00000560445	OBSCN	Q5VST9	7968 aa		3.85	□□□□□ -1.79
TPM1-223	ENST00000560445	PMAIP1	Q13794	54 aa		3.74	□□□□□ -1.81
TPM1-223	ENST00000560445	KRTAP4-4	Q9BYR3	166 aa		3.72	□□□□□ -1.81
TPM1-223	ENST00000560445	PRAC1	Q96KF2	57 aa		3.52	□□□□□ -1.85
TPM1-223	ENST00000560445	PRO0628	Q9UI54	55 aa		3.4	□□□□□ -1.87
TPM1-223	ENST00000560445	LCE1B	Q5T7P3	118 aa		3.39	□□□□□ -1.87
TPM1-223	ENST00000560445	LCE1C	Q5T751	118 aa		3.38	□□□□□ -1.87
TPM1-223	ENST00000560445	LCE1F	Q5T754	118 aa		3.31	□□□□□ -1.88
TPM1-223	ENST00000560445	KTN1-AS1	Q86SY8	53 aa		3.27	□□□□□ -1.89
TPM1-223	ENST00000560445	LCE3D	Q9BYE3	92 aa		3.23	□□□□□ -1.89
TPM1-223	ENST00000560445	SVIP	Q8NHG7	77 aa		3.18	□□□□□ -1.9
TPM1-223	ENST00000560445	LUZP6	Q538Z0	58 aa		3.14	□□□□□ -1.91
TPM1-223	ENST00000560445	LCE3E	Q5T5B0	92 aa		3.04	□□□□□ -1.92
TPM1-223	ENST00000560445	KRTAP21-2	Q3LI59	83 aa		2.76	□□□□□ -1.97
TPM1-223	ENST00000560445	PHGR1	C9JFL3	82 aa		2.72	□□□□□ -1.97
TPM1-223	ENST00000560445		A0A0A0MQY5	61 aa		2.66	□□□□□ -1.98
TPM1-223	ENST00000560445	NDUFAF8	A1L188	74 aa		2.49	□□□□□ -2.01
TPM1-223	ENST00000560445	MUC19	Q7Z5P9	8384 aa		2.37	□□□□□ -2.03
TPM1-223	ENST00000560445	PRM1	P04553	51 aa		2.25	□□□□□ -2.05
TPM1-223	ENST00000560445	KRTAP21-1	Q3LI58	79 aa		2.11	□□□□□ -2.07
TPM1-223	ENST00000560445	INE1	O15225	51 aa		1.95	□□□□□ -2.1
TPM1-223	ENST00000560445	MUC16	Q8WXI7	14507 aa		1.69	□□□□□ -2.14

Retrieved 77 of 20,778 RNA–protein pairs in 6 ms