RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 LCE1AQ5T7P2 110 aa3.27□□□□□ -1.89
USP3-217ENST00000560070 MIR22HGQ0VDD5 57 aa3.26□□□□□ -1.89
USP3-217ENST00000560070 KRTAP5-1Q6L8H4 278 aa3.26□□□□□ -1.89
USP3-217ENST00000560070 C10orf95Q9H7T3 257 aa3.25□□□□□ -1.89
USP3-217ENST00000560070 Q1T7F1 81 aa3.24□□□□□ -1.89
USP3-217ENST00000560070 V9GYY9 64 aa3.24□□□□□ -1.89
USP3-217ENST00000560070 SPRR2DP22532 72 aa3.22□□□□□ -1.89
USP3-217ENST00000560070 KRTAP2-3P0C7H8 128 aa3.21□□□□□ -1.9
USP3-217ENST00000560070 KRTAP2-4Q9BYR9 128 aa3.21□□□□□ -1.9
USP3-217ENST00000560070 TNP1P09430 55 aa3.2□□□□□ -1.9
USP3-217ENST00000560070 KRTAP5-4Q6L8H1 288 aa3.2□□□□□ -1.9
USP3-217ENST00000560070 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
USP3-217ENST00000560070 KRTAP19-7Q3SYF9 63 aa3.19□□□□□ -1.9
USP3-217ENST00000560070 A6NED7 52 aa3.17□□□□□ -1.9
USP3-217ENST00000560070 MT1EP04732 61 aa3.17□□□□□ -1.9
USP3-217ENST00000560070 LCE3AQ5TA76 89 aa3.17□□□□□ -1.9
USP3-217ENST00000560070 KRTAP4-4Q9BYR3 166 aa3.17□□□□□ -1.9
USP3-217ENST00000560070 K7ERS5 55 aa3.16□□□□□ -1.9
USP3-217ENST00000560070 RPS28P62857 69 aaKnown RBP3.16□□□□□ -1.9
USP3-217ENST00000560070 KRTAP23-1A1A580 65 aa3.15□□□□□ -1.91
USP3-217ENST00000560070 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
USP3-217ENST00000560070 KRTAP2-2Q9BYT5 123 aa3.11□□□□□ -1.91
USP3-217ENST00000560070 KRTAP2-1Q9BYU5 128 aa3.11□□□□□ -1.91
USP3-217ENST00000560070 KRTAP19-3Q7Z4W3 81 aa3.1□□□□□ -1.91
USP3-217ENST00000560070 MT1GP13640 62 aa3.05□□□□□ -1.92
USP3-217ENST00000560070 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
USP3-217ENST00000560070 MT1LQ93083 61 aa3.05□□□□□ -1.92
USP3-217ENST00000560070 KRTAP12-3P60328 96 aa3.02□□□□□ -1.93
USP3-217ENST00000560070 PP632Q6XCG6 107 aa3.01□□□□□ -1.93
USP3-217ENST00000560070 MT1MQ8N339 61 aa3□□□□□ -1.93
USP3-217ENST00000560070 KRTAP4-3Q9BYR4 195 aa3□□□□□ -1.93
USP3-217ENST00000560070 CDC42SE1Q9NRR8 79 aa3□□□□□ -1.93
USP3-217ENST00000560070 DSTQ03001 7570 aaKnown RBP2.99□□□□□ -1.93
USP3-217ENST00000560070 ROMO1P60602 79 aa2.97□□□□□ -1.93
USP3-217ENST00000560070 SVIPQ8NHG7 77 aa2.86□□□□□ -1.95
USP3-217ENST00000560070 BRK1Q8WUW1 75 aa2.85□□□□□ -1.95
USP3-217ENST00000560070 MT4P47944 62 aa2.83□□□□□ -1.96
USP3-217ENST00000560070 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
USP3-217ENST00000560070 OBSCNQ5VST9 7968 aa2.76□□□□□ -1.97
USP3-217ENST00000560070 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
USP3-217ENST00000560070 HMCN1Q96RW7 5635 aa2.7□□□□□ -1.98
USP3-217ENST00000560070 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
USP3-217ENST00000560070 PMAIP1Q13794 54 aa2.69□□□□□ -1.98
USP3-217ENST00000560070 KRTAP9-6A8MVA2 160 aa2.66□□□□□ -1.98
USP3-217ENST00000560070 KRTAP12-4P60329 112 aa2.65□□□□□ -1.99
USP3-217ENST00000560070 GPR98Q8WXG9 6306 aa2.64□□□□□ -1.99
USP3-217ENST00000560070 KRTAP20-2Q3LI61 65 aa2.62□□□□□ -1.99
USP3-217ENST00000560070 SPRR5A0A1B0GTR4 108 aa2.59□□□□□ -1.99
USP3-217ENST00000560070 KRTAP6-1Q3LI64 71 aa2.59□□□□□ -1.99
USP3-217ENST00000560070 PRAC1Q96KF2 57 aa2.59□□□□□ -1.99
USP3-217ENST00000560070 AHNAK2Q8IVF2 5795 aa2.59□□□□□ -1.99
USP3-217ENST00000560070 SYNE1Q8NF91 8797 aaKnown RBP2.58□□□□□ -2
USP3-217ENST00000560070 MT1AP04731 61 aa2.58□□□□□ -2
USP3-217ENST00000560070 PRO0628Q9UI54 55 aa2.53□□□□□ -2
USP3-217ENST00000560070 KRTAP5-10Q6L8G5 202 aa2.51□□□□□ -2.01
USP3-217ENST00000560070 KRTAP6-2Q3LI66 62 aa2.46□□□□□ -2.02
USP3-217ENST00000560070 MT3P25713 68 aa2.4□□□□□ -2.03
USP3-217ENST00000560070 KRTAP5-7Q6L8G8 165 aa2.39□□□□□ -2.03
USP3-217ENST00000560070 KTN1-AS1Q86SY8 53 aa2.39□□□□□ -2.03
USP3-217ENST00000560070 KRTAP5-8O75690 187 aa2.33□□□□□ -2.04
USP3-217ENST00000560070 LUZP6Q538Z0 58 aa2.13□□□□□ -2.07
USP3-217ENST00000560070 LCE1FQ5T754 118 aa2.13□□□□□ -2.07
USP3-217ENST00000560070 AHNAKQ09666 5890 aaKnown RBP2.12□□□□□ -2.07
USP3-217ENST00000560070 MUC5ACP98088 5654 aa2.12□□□□□ -2.07
USP3-217ENST00000560070 MUC5BQ9HC84 5762 aaPredicted RBP2.1□□□□□ -2.07
USP3-217ENST00000560070 LCE1BQ5T7P3 118 aa2.08□□□□□ -2.08
USP3-217ENST00000560070 LCE3DQ9BYE3 92 aa2.05□□□□□ -2.08
USP3-217ENST00000560070 A0A0A0MQY5 61 aa2.04□□□□□ -2.08
USP3-217ENST00000560070 LCE1CQ5T751 118 aa1.99□□□□□ -2.09
USP3-217ENST00000560070 LCE3EQ5T5B0 92 aa1.95□□□□□ -2.1
USP3-217ENST00000560070 NDUFAF8A1L188 74 aa1.84□□□□□ -2.11
USP3-217ENST00000560070 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
USP3-217ENST00000560070 KRTAP21-2Q3LI59 83 aa1.68□□□□□ -2.14
USP3-217ENST00000560070 PRM1P04553 51 aa1.54□□□□□ -2.16
USP3-217ENST00000560070 PHGR1C9JFL3 82 aa1.52□□□□□ -2.17
USP3-217ENST00000560070 INE1O15225 51 aa1.44□□□□□ -2.18
USP3-217ENST00000560070 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
USP3-217ENST00000560070 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 10.6 ms