RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PRR15LQ9BU68 103 aa4.53□□□□□ -1.68
SNX1-209ENST00000559961 DSTQ03001 7570 aaKnown RBP4.52□□□□□ -1.69
SNX1-209ENST00000559961 KRTAP23-1A1A580 65 aa4.51□□□□□ -1.69
SNX1-209ENST00000559961 A8MU10 97 aa4.49□□□□□ -1.69
SNX1-209ENST00000559961 ANAPC13Q9BS18 74 aa4.48□□□□□ -1.69
SNX1-209ENST00000559961 GPR98Q8WXG9 6306 aa4.47□□□□□ -1.69
SNX1-209ENST00000559961 MT1MQ8N339 61 aa4.45□□□□□ -1.7
SNX1-209ENST00000559961 MT1LQ93083 61 aa4.44□□□□□ -1.7
SNX1-209ENST00000559961 C10orf95Q9H7T3 257 aa4.44□□□□□ -1.7
SNX1-209ENST00000559961 MT4P47944 62 aa4.43□□□□□ -1.7
SNX1-209ENST00000559961 LCE3AQ5TA76 89 aa4.42□□□□□ -1.7
SNX1-209ENST00000559961 ATP5EP56381 51 aaPredicted RBP4.4□□□□□ -1.71
SNX1-209ENST00000559961 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
SNX1-209ENST00000559961 CCDC179H3BU77 68 aa4.32□□□□□ -1.72
SNX1-209ENST00000559961 UQCR11O14957 56 aa4.32□□□□□ -1.72
SNX1-209ENST00000559961 LINC01558Q9Y6Z2 57 aa4.32□□□□□ -1.72
SNX1-209ENST00000559961 KRTAP4-3Q9BYR4 195 aa4.31□□□□□ -1.72
SNX1-209ENST00000559961 KRTAP12-3P60328 96 aa4.3□□□□□ -1.72
SNX1-209ENST00000559961 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
SNX1-209ENST00000559961 KRTAP5-3Q6L8H2 238 aa4.29□□□□□ -1.72
SNX1-209ENST00000559961 K7ERS5 55 aa4.27□□□□□ -1.73
SNX1-209ENST00000559961 KRTAP5-4Q6L8H1 288 aa4.27□□□□□ -1.73
SNX1-209ENST00000559961 PCP4P48539 62 aa4.22□□□□□ -1.73
SNX1-209ENST00000559961 TMEM258P61165 79 aa4.21□□□□□ -1.74
SNX1-209ENST00000559961 KRTAP25-1Q3LHN0 102 aa4.21□□□□□ -1.74
SNX1-209ENST00000559961 MIR22HGQ0VDD5 57 aa4.19□□□□□ -1.74
SNX1-209ENST00000559961 AHNAK2Q8IVF2 5795 aa4.15□□□□□ -1.74
SNX1-209ENST00000559961 KRTAP5-10Q6L8G5 202 aa4.15□□□□□ -1.75
SNX1-209ENST00000559961 KRTAP12-4P60329 112 aa4.14□□□□□ -1.75
SNX1-209ENST00000559961 V9GYY9 64 aa4.1□□□□□ -1.75
SNX1-209ENST00000559961 SPRR5A0A1B0GTR4 108 aa4.08□□□□□ -1.76
SNX1-209ENST00000559961 KRTAP20-2Q3LI61 65 aa4.07□□□□□ -1.76
SNX1-209ENST00000559961 KRTAP5-5Q701N2 237 aaPredicted RBP4.04□□□□□ -1.76
SNX1-209ENST00000559961 KRTAP5-7Q6L8G8 165 aa4.03□□□□□ -1.76
SNX1-209ENST00000559961 PSPHP1O15172 72 aa4.02□□□□□ -1.77
SNX1-209ENST00000559961 Q1T7F1 81 aa3.95□□□□□ -1.78
SNX1-209ENST00000559961 LCE3CQ5T5A8 94 aa3.94□□□□□ -1.78
SNX1-209ENST00000559961 CDC42SE1Q9NRR8 79 aa3.94□□□□□ -1.78
SNX1-209ENST00000559961 A6NED7 52 aa3.93□□□□□ -1.78
SNX1-209ENST00000559961 A0A0A0MQY5 61 aa3.91□□□□□ -1.78
SNX1-209ENST00000559961 RPS28P62857 69 aaKnown RBP3.9□□□□□ -1.79
SNX1-209ENST00000559961 ROMO1P60602 79 aa3.83□□□□□ -1.8
SNX1-209ENST00000559961 SYNE1Q8NF91 8797 aaKnown RBP3.81□□□□□ -1.8
SNX1-209ENST00000559961 MT1AP04731 61 aa3.8□□□□□ -1.8
SNX1-209ENST00000559961 KRTAP6-1Q3LI64 71 aa3.75□□□□□ -1.81
SNX1-209ENST00000559961 KRTAP5-2Q701N4 177 aa3.71□□□□□ -1.82
SNX1-209ENST00000559961 KRTAP6-2Q3LI66 62 aa3.64□□□□□ -1.83
SNX1-209ENST00000559961 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
SNX1-209ENST00000559961 KRTAP5-8O75690 187 aa3.59□□□□□ -1.83
SNX1-209ENST00000559961 MT3P25713 68 aa3.55□□□□□ -1.84
SNX1-209ENST00000559961 AHNAKQ09666 5890 aaKnown RBP3.45□□□□□ -1.86
SNX1-209ENST00000559961 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
SNX1-209ENST00000559961 MUC5ACP98088 5654 aa3.44□□□□□ -1.86
SNX1-209ENST00000559961 BRK1Q8WUW1 75 aa3.43□□□□□ -1.86
SNX1-209ENST00000559961 OBSCNQ5VST9 7968 aa3.41□□□□□ -1.86
SNX1-209ENST00000559961 KRTAP5-11Q6L8G4 156 aa3.34□□□□□ -1.87
SNX1-209ENST00000559961 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
SNX1-209ENST00000559961 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.28□□□□□ -1.88
SNX1-209ENST00000559961 LCE1EQ5T753 118 aa3.25□□□□□ -1.89
SNX1-209ENST00000559961 PMAIP1Q13794 54 aa3.24□□□□□ -1.89
SNX1-209ENST00000559961 PRAC1Q96KF2 57 aa3.21□□□□□ -1.9
SNX1-209ENST00000559961 LCE1BQ5T7P3 118 aa3.1□□□□□ -1.91
SNX1-209ENST00000559961 PRO0628Q9UI54 55 aa3.1□□□□□ -1.91
SNX1-209ENST00000559961 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
SNX1-209ENST00000559961 LCE1CQ5T751 118 aa2.99□□□□□ -1.93
SNX1-209ENST00000559961 NDUFAF8A1L188 74 aa2.96□□□□□ -1.94
SNX1-209ENST00000559961 KTN1-AS1Q86SY8 53 aa2.94□□□□□ -1.94
SNX1-209ENST00000559961 LCE3DQ9BYE3 92 aa2.86□□□□□ -1.95
SNX1-209ENST00000559961 KRTAP4-4Q9BYR3 166 aa2.73□□□□□ -1.97
SNX1-209ENST00000559961 LCE3EQ5T5B0 92 aa2.67□□□□□ -1.98
SNX1-209ENST00000559961 LUZP6Q538Z0 58 aa2.65□□□□□ -1.99
SNX1-209ENST00000559961 PHGR1C9JFL3 82 aa2.49□□□□□ -2.01
SNX1-209ENST00000559961 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
SNX1-209ENST00000559961 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
SNX1-209ENST00000559961 PRM1P04553 51 aa1.92□□□□□ -2.1
SNX1-209ENST00000559961 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
SNX1-209ENST00000559961 INE1O15225 51 aa1.83□□□□□ -2.12
SNX1-209ENST00000559961 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 50.8 ms