RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 KRTAP19-3Q7Z4W3 81 aa3.02□□□□□ -1.93
SNX1-207ENST00000559401 TNP1P09430 55 aa3.01□□□□□ -1.93
SNX1-207ENST00000559401 KRTAP19-5Q3LI72 72 aa3.01□□□□□ -1.93
SNX1-207ENST00000559401 DSTQ03001 7570 aaKnown RBP3□□□□□ -1.93
SNX1-207ENST00000559401 K7ERS5 55 aa3□□□□□ -1.93
SNX1-207ENST00000559401 LCE5AQ5TCM9 118 aa3□□□□□ -1.93
SNX1-207ENST00000559401 C10orf95Q9H7T3 257 aa3□□□□□ -1.93
SNX1-207ENST00000559401 LCE3AQ5TA76 89 aa2.97□□□□□ -1.93
SNX1-207ENST00000559401 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
SNX1-207ENST00000559401 MT1GP13640 62 aa2.94□□□□□ -1.94
SNX1-207ENST00000559401 PMAIP1Q13794 54 aa2.93□□□□□ -1.94
SNX1-207ENST00000559401 MT1LQ93083 61 aa2.91□□□□□ -1.94
SNX1-207ENST00000559401 MT1MQ8N339 61 aa2.9□□□□□ -1.95
SNX1-207ENST00000559401 KRTAP4-9Q9BYQ8 210 aa2.87□□□□□ -1.95
SNX1-207ENST00000559401 KRTAP12-3P60328 96 aa2.85□□□□□ -1.95
SNX1-207ENST00000559401 ROMO1P60602 79 aa2.84□□□□□ -1.95
SNX1-207ENST00000559401 KRTAP25-1Q3LHN0 102 aa2.84□□□□□ -1.95
SNX1-207ENST00000559401 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.95
SNX1-207ENST00000559401 MT4P47944 62 aa2.8□□□□□ -1.96
SNX1-207ENST00000559401 LCE1DQ5T752 114 aa2.8□□□□□ -1.96
SNX1-207ENST00000559401 KTN1-AS1Q86SY8 53 aa2.8□□□□□ -1.96
SNX1-207ENST00000559401 LCE4AQ5TA78 99 aa2.79□□□□□ -1.96
SNX1-207ENST00000559401 KRTAP4-7Q9BYR0 210 aa2.78□□□□□ -1.96
SNX1-207ENST00000559401 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
SNX1-207ENST00000559401 KRTAP23-1A1A580 65 aa2.75□□□□□ -1.97
SNX1-207ENST00000559401 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
SNX1-207ENST00000559401 LOC100996750A0A140TA64 210 aa2.71□□□□□ -1.98
SNX1-207ENST00000559401 PRAC1Q96KF2 57 aa2.71□□□□□ -1.98
SNX1-207ENST00000559401 KRTAP4-6Q9BYQ5 205 aa2.71□□□□□ -1.98
SNX1-207ENST00000559401 HMCN1Q96RW7 5635 aa2.7□□□□□ -1.98
SNX1-207ENST00000559401 KRTAP15-1Q3LI76 137 aa2.67□□□□□ -1.98
SNX1-207ENST00000559401 KRTAP19-4Q3LI73 84 aa2.65□□□□□ -1.99
SNX1-207ENST00000559401 LCE3CQ5T5A8 94 aa2.62□□□□□ -1.99
SNX1-207ENST00000559401 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
SNX1-207ENST00000559401 A0A0A0MQY5 61 aa2.61□□□□□ -1.99
SNX1-207ENST00000559401 KRTAP12-4P60329 112 aa2.6□□□□□ -1.99
SNX1-207ENST00000559401 AHNAK2Q8IVF2 5795 aa2.6□□□□□ -1.99
SNX1-207ENST00000559401 KRTAP20-2Q3LI61 65 aa2.59□□□□□ -1.99
SNX1-207ENST00000559401 SPRR5A0A1B0GTR4 108 aa2.56□□□□□ -2
SNX1-207ENST00000559401 KRTAP5-10Q6L8G5 202 aa2.55□□□□□ -2
SNX1-207ENST00000559401 SYNE1Q8NF91 8797 aaKnown RBP2.55□□□□□ -2
SNX1-207ENST00000559401 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
SNX1-207ENST00000559401 MT1AP04731 61 aa2.49□□□□□ -2.01
SNX1-207ENST00000559401 KRTAP6-1Q3LI64 71 aa2.47□□□□□ -2.01
SNX1-207ENST00000559401 KRTAP9-6A8MVA2 160 aa2.45□□□□□ -2.02
SNX1-207ENST00000559401 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
SNX1-207ENST00000559401 KRTAP9-4Q9BYQ2 154 aa2.39□□□□□ -2.03
SNX1-207ENST00000559401 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
SNX1-207ENST00000559401 KRTAP4-12Q9BQ66 201 aa2.38□□□□□ -2.03
SNX1-207ENST00000559401 KRTAP6-2Q3LI66 62 aa2.36□□□□□ -2.03
SNX1-207ENST00000559401 KRTAP4-11Q9BYQ6 195 aa2.35□□□□□ -2.03
SNX1-207ENST00000559401 OBSCNQ5VST9 7968 aa2.33□□□□□ -2.04
SNX1-207ENST00000559401 KRTAP9-9Q9BYP9 154 aa2.31□□□□□ -2.04
SNX1-207ENST00000559401 MT3P25713 68 aa2.28□□□□□ -2.04
SNX1-207ENST00000559401 LUZP6Q538Z0 58 aa2.28□□□□□ -2.04
SNX1-207ENST00000559401 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
SNX1-207ENST00000559401 NDUFAF8A1L188 74 aa2.16□□□□□ -2.06
SNX1-207ENST00000559401 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
SNX1-207ENST00000559401 MUC5ACP98088 5654 aa2.14□□□□□ -2.07
SNX1-207ENST00000559401 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
SNX1-207ENST00000559401 KRTAP5-1Q6L8H4 278 aa2.13□□□□□ -2.07
SNX1-207ENST00000559401 KRTAP4-2Q9BYR5 136 aa2.1□□□□□ -2.07
SNX1-207ENST00000559401 LCE1EQ5T753 118 aa2.05□□□□□ -2.08
SNX1-207ENST00000559401 LCE1BQ5T7P3 118 aa1.99□□□□□ -2.09
SNX1-207ENST00000559401 LCE3DQ9BYE3 92 aa1.91□□□□□ -2.1
SNX1-207ENST00000559401 LCE1CQ5T751 118 aa1.9□□□□□ -2.11
SNX1-207ENST00000559401 INE1O15225 51 aa1.82□□□□□ -2.12
SNX1-207ENST00000559401 LCE3EQ5T5B0 92 aa1.8□□□□□ -2.12
SNX1-207ENST00000559401 KRTAP5-11Q6L8G4 156 aa1.73□□□□□ -2.13
SNX1-207ENST00000559401 LCE1FQ5T754 118 aa1.72□□□□□ -2.13
SNX1-207ENST00000559401 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.72□□□□□ -2.13
SNX1-207ENST00000559401 KRTAP21-2Q3LI59 83 aa1.6□□□□□ -2.15
SNX1-207ENST00000559401 PHGR1C9JFL3 82 aa1.52□□□□□ -2.17
SNX1-207ENST00000559401 KRTAP4-4Q9BYR3 166 aa1.51□□□□□ -2.17
SNX1-207ENST00000559401 PRM1P04553 51 aa1.46□□□□□ -2.18
SNX1-207ENST00000559401 MUC19Q7Z5P9 8384 aa1.42□□□□□ -2.18
SNX1-207ENST00000559401 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
SNX1-207ENST00000559401 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 142.4 ms