RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 KRTAP19-3Q7Z4W3 81 aa3.94□□□□□ -1.78
TPM1-217ENST00000559108 MT1LQ93083 61 aa3.91□□□□□ -1.78
TPM1-217ENST00000559108 KRTAP2-3P0C7H8 128 aa3.88□□□□□ -1.79
TPM1-217ENST00000559108 KRTAP12-3P60328 96 aa3.88□□□□□ -1.79
TPM1-217ENST00000559108 ROMO1P60602 79 aa3.88□□□□□ -1.79
TPM1-217ENST00000559108 KRTAP2-4Q9BYR9 128 aa3.88□□□□□ -1.79
TPM1-217ENST00000559108 MT1MQ8N339 61 aa3.84□□□□□ -1.79
TPM1-217ENST00000559108 MT1GP13640 62 aa3.83□□□□□ -1.8
TPM1-217ENST00000559108 LCE3BQ5TA77 95 aa3.83□□□□□ -1.8
TPM1-217ENST00000559108 BRK1Q8WUW1 75 aa3.82□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP4-3Q9BYR4 195 aa3.82□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP4-12Q9BQ66 201 aa3.81□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP4-7Q9BYR0 210 aa3.8□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP23-1A1A580 65 aa3.79□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP9-9Q9BYP9 154 aa3.79□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP9-4Q9BYQ2 154 aa3.79□□□□□ -1.8
TPM1-217ENST00000559108 KRTAP2-2Q9BYT5 123 aa3.76□□□□□ -1.81
TPM1-217ENST00000559108 KRTAP2-1Q9BYU5 128 aa3.76□□□□□ -1.81
TPM1-217ENST00000559108 SVIPQ8NHG7 77 aa3.74□□□□□ -1.81
TPM1-217ENST00000559108 PP632Q6XCG6 107 aa3.73□□□□□ -1.81
TPM1-217ENST00000559108 DSTQ03001 7570 aaKnown RBP3.71□□□□□ -1.82
TPM1-217ENST00000559108 KRTAP15-1Q3LI76 137 aa3.68□□□□□ -1.82
TPM1-217ENST00000559108 LCE3CQ5T5A8 94 aa3.6□□□□□ -1.83
TPM1-217ENST00000559108 PMAIP1Q13794 54 aa3.58□□□□□ -1.84
TPM1-217ENST00000559108 LCE1DQ5T752 114 aa3.56□□□□□ -1.84
TPM1-217ENST00000559108 KRTAP4-9Q9BYQ8 210 aa3.55□□□□□ -1.84
TPM1-217ENST00000559108 KRTAP19-4Q3LI73 84 aa3.53□□□□□ -1.84
TPM1-217ENST00000559108 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
TPM1-217ENST00000559108 KRTAP5-5Q701N2 237 aaPredicted RBP3.53□□□□□ -1.84
TPM1-217ENST00000559108 KRTAP9-6A8MVA2 160 aa3.51□□□□□ -1.85
TPM1-217ENST00000559108 PRAC1Q96KF2 57 aa3.51□□□□□ -1.85
TPM1-217ENST00000559108 PRO0628Q9UI54 55 aa3.51□□□□□ -1.85
TPM1-217ENST00000559108 KRTAP4-2Q9BYR5 136 aa3.49□□□□□ -1.85
TPM1-217ENST00000559108 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
TPM1-217ENST00000559108 MT4P47944 62 aa3.46□□□□□ -1.86
TPM1-217ENST00000559108 HMCN1Q96RW7 5635 aa3.36□□□□□ -1.87
TPM1-217ENST00000559108 SYNE1Q8NF91 8797 aaKnown RBP3.34□□□□□ -1.87
TPM1-217ENST00000559108 KRTAP4-11Q9BYQ6 195 aa3.34□□□□□ -1.87
TPM1-217ENST00000559108 KRTAP6-1Q3LI64 71 aa3.32□□□□□ -1.88
TPM1-217ENST00000559108 KTN1-AS1Q86SY8 53 aa3.32□□□□□ -1.88
TPM1-217ENST00000559108 MT1AP04731 61 aa3.31□□□□□ -1.88
TPM1-217ENST00000559108 KRTAP20-2Q3LI61 65 aa3.3□□□□□ -1.88
TPM1-217ENST00000559108 SPRR5A0A1B0GTR4 108 aa3.26□□□□□ -1.89
TPM1-217ENST00000559108 KRTAP12-4P60329 112 aa3.24□□□□□ -1.89
TPM1-217ENST00000559108 KRTAP5-3Q6L8H2 238 aa3.23□□□□□ -1.89
TPM1-217ENST00000559108 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
TPM1-217ENST00000559108 AHNAK2Q8IVF2 5795 aa3.15□□□□□ -1.9
TPM1-217ENST00000559108 KRTAP5-2Q701N4 177 aa3.15□□□□□ -1.91
TPM1-217ENST00000559108 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
TPM1-217ENST00000559108 KRTAP6-2Q3LI66 62 aa3.11□□□□□ -1.91
TPM1-217ENST00000559108 MT3P25713 68 aa2.96□□□□□ -1.94
TPM1-217ENST00000559108 KRTAP5-7Q6L8G8 165 aa2.93□□□□□ -1.94
TPM1-217ENST00000559108 H3BS24 57 aa2.92□□□□□ -1.94
TPM1-217ENST00000559108 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
TPM1-217ENST00000559108 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
TPM1-217ENST00000559108 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
TPM1-217ENST00000559108 LUZP6Q538Z0 58 aa2.72□□□□□ -1.97
TPM1-217ENST00000559108 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
TPM1-217ENST00000559108 MUC5ACP98088 5654 aa2.65□□□□□ -1.99
TPM1-217ENST00000559108 LCE3DQ9BYE3 92 aa2.6□□□□□ -1.99
TPM1-217ENST00000559108 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2
TPM1-217ENST00000559108 LCE1BQ5T7P3 118 aa2.52□□□□□ -2.01
TPM1-217ENST00000559108 NDUFAF8A1L188 74 aa2.51□□□□□ -2.01
TPM1-217ENST00000559108 LCE3EQ5T5B0 92 aa2.49□□□□□ -2.01
TPM1-217ENST00000559108 LCE1CQ5T751 118 aa2.49□□□□□ -2.01
TPM1-217ENST00000559108 AHNAKQ09666 5890 aaKnown RBP2.49□□□□□ -2.01
TPM1-217ENST00000559108 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
TPM1-217ENST00000559108 A0A0A0MQY5 61 aa2.29□□□□□ -2.04
TPM1-217ENST00000559108 KRTAP5-11Q6L8G4 156 aa2.28□□□□□ -2.04
TPM1-217ENST00000559108 KRTAP21-2Q3LI59 83 aa2.2□□□□□ -2.06
TPM1-217ENST00000559108 LCE1FQ5T754 118 aa2.08□□□□□ -2.08
TPM1-217ENST00000559108 PRM1P04553 51 aa2.04□□□□□ -2.08
TPM1-217ENST00000559108 KRTAP4-4Q9BYR3 166 aa1.99□□□□□ -2.09
TPM1-217ENST00000559108 INE1O15225 51 aa1.97□□□□□ -2.09
TPM1-217ENST00000559108 PHGR1C9JFL3 82 aa1.95□□□□□ -2.1
TPM1-217ENST00000559108 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
TPM1-217ENST00000559108 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
TPM1-217ENST00000559108 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 94.4 ms