RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 NDUFAF8A1L188 74 aa2.36□□□□□ -2.03
SYNE2-225ENST00000557060 PRO2289Q9P1D8 64 aa2.36□□□□□ -2.03
SYNE2-225ENST00000557060 KRTAP10-12P60413 245 aa2.35□□□□□ -2.03
SYNE2-225ENST00000557060 LCE1AQ5T7P2 110 aa2.35□□□□□ -2.03
SYNE2-225ENST00000557060 SSPOA2VEC9 5147 aa2.3□□□□□ -2.04
SYNE2-225ENST00000557060 KRTAP12-3P60328 96 aa2.29□□□□□ -2.04
SYNE2-225ENST00000557060 LUZP6Q538Z0 58 aa2.27□□□□□ -2.05
SYNE2-225ENST00000557060 KRTAP19-5Q3LI72 72 aa2.25□□□□□ -2.05
SYNE2-225ENST00000557060 KRTAP8-1Q8IUC2 63 aa2.25□□□□□ -2.05
SYNE2-225ENST00000557060 DSTQ03001 7570 aaKnown RBP2.24□□□□□ -2.05
SYNE2-225ENST00000557060 LCE1FQ5T754 118 aa2.24□□□□□ -2.05
SYNE2-225ENST00000557060 MACF1Q9UPN3 7388 aaKnown RBP2.22□□□□□ -2.05
SYNE2-225ENST00000557060 SYNE2Q8WXH0 6885 aaKnown RBP2.2□□□□□ -2.06
SYNE2-225ENST00000557060 FCGBPQ9Y6R7 5405 aaPredicted RBP2.19□□□□□ -2.06
SYNE2-225ENST00000557060 KRTAP2-2Q9BYT5 123 aa2.19□□□□□ -2.06
SYNE2-225ENST00000557060 MUC12Q9UKN1 5478 aa2.19□□□□□ -2.06
SYNE2-225ENST00000557060 KRTAP19-6Q3LI70 58 aa2.16□□□□□ -2.06
SYNE2-225ENST00000557060 KRTAP19-7Q3SYF9 63 aa2.15□□□□□ -2.07
SYNE2-225ENST00000557060 SPRR5A0A1B0GTR4 108 aa2.13□□□□□ -2.07
SYNE2-225ENST00000557060 LCE3CQ5T5A8 94 aa2.13□□□□□ -2.07
SYNE2-225ENST00000557060 CRCT1Q9UGL9 99 aa2.11□□□□□ -2.07
SYNE2-225ENST00000557060 HMCN1Q96RW7 5635 aa2.1□□□□□ -2.07
SYNE2-225ENST00000557060 MT1EP04732 61 aa2.09□□□□□ -2.07
SYNE2-225ENST00000557060 SPRR2FQ96RM1 72 aa2.08□□□□□ -2.08
SYNE2-225ENST00000557060 KRTAP4-3Q9BYR4 195 aa2.08□□□□□ -2.08
SYNE2-225ENST00000557060 MT1LQ93083 61 aa2.07□□□□□ -2.08
SYNE2-225ENST00000557060 KRTAP9-6A8MVA2 160 aa2.06□□□□□ -2.08
SYNE2-225ENST00000557060 MT3P25713 68 aa2.06□□□□□ -2.08
SYNE2-225ENST00000557060 SYNE1Q8NF91 8797 aaKnown RBP2.04□□□□□ -2.08
SYNE2-225ENST00000557060 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
SYNE2-225ENST00000557060 OBSCNQ5VST9 7968 aa2.03□□□□□ -2.08
SYNE2-225ENST00000557060 MT1GP13640 62 aa2□□□□□ -2.09
SYNE2-225ENST00000557060 KRTAP19-3Q7Z4W3 81 aa1.99□□□□□ -2.09
SYNE2-225ENST00000557060 LCE3EQ5T5B0 92 aa1.98□□□□□ -2.09
SYNE2-225ENST00000557060 MT1MQ8N339 61 aa1.97□□□□□ -2.09
SYNE2-225ENST00000557060 SPRR2EP22531 72 aa1.92□□□□□ -2.1
SYNE2-225ENST00000557060 SPRR2BP35325 72 aa1.92□□□□□ -2.1
SYNE2-225ENST00000557060 SPRR2AP35326 72 aa1.92□□□□□ -2.1
SYNE2-225ENST00000557060 KRTAP6-3Q3LI67 103 aa1.92□□□□□ -2.1
SYNE2-225ENST00000557060 KRTAP20-1Q3LI63 56 aa1.87□□□□□ -2.11
SYNE2-225ENST00000557060 KRTAP5-9P26371 169 aa1.85□□□□□ -2.11
SYNE2-225ENST00000557060 KRTAP2-3P0C7H8 128 aa1.84□□□□□ -2.12
SYNE2-225ENST00000557060 KRTAP2-4Q9BYR9 128 aa1.84□□□□□ -2.12
SYNE2-225ENST00000557060 KRTAP2-1Q9BYU5 128 aa1.84□□□□□ -2.12
SYNE2-225ENST00000557060 SPRR2DP22532 72 aa1.83□□□□□ -2.12
SYNE2-225ENST00000557060 MUC5BQ9HC84 5762 aaPredicted RBP1.79□□□□□ -2.12
SYNE2-225ENST00000557060 KRTAP6-1Q3LI64 71 aa1.79□□□□□ -2.12
SYNE2-225ENST00000557060 INE1O15225 51 aa1.76□□□□□ -2.13
SYNE2-225ENST00000557060 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.76□□□□□ -2.13
SYNE2-225ENST00000557060 NEBP20929 6669 aa1.73□□□□□ -2.13
SYNE2-225ENST00000557060 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
SYNE2-225ENST00000557060 LCE3DQ9BYE3 92 aa1.72□□□□□ -2.13
SYNE2-225ENST00000557060 MT1AP04731 61 aa1.72□□□□□ -2.13
SYNE2-225ENST00000557060 KRTAP12-4P60329 112 aa1.7□□□□□ -2.14
SYNE2-225ENST00000557060 KRTAP5-5Q701N2 237 aaPredicted RBP1.7□□□□□ -2.14
SYNE2-225ENST00000557060 MT4P47944 62 aa1.68□□□□□ -2.14
SYNE2-225ENST00000557060 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
SYNE2-225ENST00000557060 KRTAP6-2Q3LI66 62 aa1.65□□□□□ -2.14
SYNE2-225ENST00000557060 LCE1EQ5T753 118 aa1.64□□□□□ -2.15
SYNE2-225ENST00000557060 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
SYNE2-225ENST00000557060 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
SYNE2-225ENST00000557060 KRTAP5-10Q6L8G5 202 aa1.58□□□□□ -2.16
SYNE2-225ENST00000557060 KRTAP5-4Q6L8H1 288 aa1.55□□□□□ -2.16
SYNE2-225ENST00000557060 KRTAP20-2Q3LI61 65 aa1.52□□□□□ -2.17
SYNE2-225ENST00000557060 KRTAP5-1Q6L8H4 278 aa1.51□□□□□ -2.17
SYNE2-225ENST00000557060 PRM1P04553 51 aa1.49□□□□□ -2.17
SYNE2-225ENST00000557060 KRTAP4-4Q9BYR3 166 aa1.47□□□□□ -2.17
SYNE2-225ENST00000557060 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
SYNE2-225ENST00000557060 KRTAP5-8O75690 187 aa1.44□□□□□ -2.18
SYNE2-225ENST00000557060 KRTAP5-2Q701N4 177 aa1.42□□□□□ -2.18
SYNE2-225ENST00000557060 LCE1BQ5T7P3 118 aa1.4□□□□□ -2.18
SYNE2-225ENST00000557060 MUC5ACP98088 5654 aa1.34□□□□□ -2.19
SYNE2-225ENST00000557060 MUC19Q7Z5P9 8384 aa1.26□□□□□ -2.21
SYNE2-225ENST00000557060 LCE1CQ5T751 118 aa1.2□□□□□ -2.22
SYNE2-225ENST00000557060 KRTAP21-2Q3LI59 83 aa1.12□□□□□ -2.23
SYNE2-225ENST00000557060 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
SYNE2-225ENST00000557060 KRTAP21-1Q3LI58 79 aa0.83□□□□□ -2.28
SYNE2-225ENST00000557060 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 73 ms