RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 KRTAP4-3Q9BYR4 195 aa7.89□□□□□ -1.15
ACTN1-220ENST00000556433 KRTAP5-4Q6L8H1 288 aa7.79□□□□□ -1.16
ACTN1-220ENST00000556433 ATP5EP56381 51 aaPredicted RBP7.77□□□□□ -1.17
ACTN1-220ENST00000556433 AHNAK2Q8IVF2 5795 aa7.76□□□□□ -1.17
ACTN1-220ENST00000556433 KRTAP5-10Q6L8G5 202 aa7.75□□□□□ -1.17
ACTN1-220ENST00000556433 KRTAP4-6Q9BYQ5 205 aa7.71□□□□□ -1.18
ACTN1-220ENST00000556433 PRR15LQ9BU68 103 aa7.69□□□□□ -1.18
ACTN1-220ENST00000556433 TMEM258P61165 79 aa7.64□□□□□ -1.19
ACTN1-220ENST00000556433 KRTAP4-7Q9BYR0 210 aa7.64□□□□□ -1.19
ACTN1-220ENST00000556433 KRTAP12-3P60328 96 aa7.63□□□□□ -1.19
ACTN1-220ENST00000556433 LINC01558Q9Y6Z2 57 aa7.56□□□□□ -1.2
ACTN1-220ENST00000556433 KRTAP5-7Q6L8G8 165 aa7.53□□□□□ -1.2
ACTN1-220ENST00000556433 KRTAP5-3Q6L8H2 238 aa7.44□□□□□ -1.22
ACTN1-220ENST00000556433 UQCR11O14957 56 aa7.43□□□□□ -1.22
ACTN1-220ENST00000556433 KRTAP5-5Q701N2 237 aaPredicted RBP7.38□□□□□ -1.23
ACTN1-220ENST00000556433 KRTAP20-2Q3LI61 65 aa7.37□□□□□ -1.23
ACTN1-220ENST00000556433 KRTAP25-1Q3LHN0 102 aa7.33□□□□□ -1.24
ACTN1-220ENST00000556433 SPRR5A0A1B0GTR4 108 aa7.31□□□□□ -1.24
ACTN1-220ENST00000556433 KRTAP12-4P60329 112 aa7.28□□□□□ -1.24
ACTN1-220ENST00000556433 LOC100996750A0A140TA64 210 aa7.25□□□□□ -1.25
ACTN1-220ENST00000556433 MIR22HGQ0VDD5 57 aa7.24□□□□□ -1.25
ACTN1-220ENST00000556433 V9GYY9 64 aa7.2□□□□□ -1.26
ACTN1-220ENST00000556433 K7ERS5 55 aa7.16□□□□□ -1.26
ACTN1-220ENST00000556433 KRTAP19-4Q3LI73 84 aa7.16□□□□□ -1.26
ACTN1-220ENST00000556433 SYNE1Q8NF91 8797 aaKnown RBP7.15□□□□□ -1.26
ACTN1-220ENST00000556433 Q1T7F1 81 aa7.15□□□□□ -1.26
ACTN1-220ENST00000556433 PCP4P48539 62 aa7.1□□□□□ -1.27
ACTN1-220ENST00000556433 PSPHP1O15172 72 aa7.09□□□□□ -1.27
ACTN1-220ENST00000556433 KRTAP15-1Q3LI76 137 aa7.05□□□□□ -1.28
ACTN1-220ENST00000556433 KRTAP23-1A1A580 65 aa7.03□□□□□ -1.28
ACTN1-220ENST00000556433 RPS28P62857 69 aaKnown RBP7□□□□□ -1.29
ACTN1-220ENST00000556433 LCE3CQ5T5A8 94 aa7□□□□□ -1.29
ACTN1-220ENST00000556433 A6NED7 52 aa6.87□□□□□ -1.31
ACTN1-220ENST00000556433 MT1AP04731 61 aa6.82□□□□□ -1.32
ACTN1-220ENST00000556433 KRTAP6-1Q3LI64 71 aa6.8□□□□□ -1.32
ACTN1-220ENST00000556433 KRTAP4-11Q9BYQ6 195 aa6.8□□□□□ -1.32
ACTN1-220ENST00000556433 KRTAP5-2Q701N4 177 aa6.77□□□□□ -1.33
ACTN1-220ENST00000556433 CDC42SE1Q9NRR8 79 aa6.73□□□□□ -1.33
ACTN1-220ENST00000556433 KRTAP9-4Q9BYQ2 154 aa6.63□□□□□ -1.35
ACTN1-220ENST00000556433 ROMO1P60602 79 aa6.62□□□□□ -1.35
ACTN1-220ENST00000556433 KRTAP9-6A8MVA2 160 aa6.6□□□□□ -1.35
ACTN1-220ENST00000556433 KRTAP5-8O75690 187 aa6.56□□□□□ -1.36
ACTN1-220ENST00000556433 KRTAP6-2Q3LI66 62 aa6.55□□□□□ -1.36
ACTN1-220ENST00000556433 MUC5ACP98088 5654 aa6.52□□□□□ -1.37
ACTN1-220ENST00000556433 AHNAKQ09666 5890 aaKnown RBP6.5□□□□□ -1.37
ACTN1-220ENST00000556433 MUC5BQ9HC84 5762 aaPredicted RBP6.46□□□□□ -1.38
ACTN1-220ENST00000556433 OBSCNQ5VST9 7968 aa6.42□□□□□ -1.38
ACTN1-220ENST00000556433 KRTAP9-9Q9BYP9 154 aa6.31□□□□□ -1.4
ACTN1-220ENST00000556433 MT3P25713 68 aa6.27□□□□□ -1.41
ACTN1-220ENST00000556433 BRK1Q8WUW1 75 aa6.15□□□□□ -1.42
ACTN1-220ENST00000556433 KRTAP5-1Q6L8H4 278 aa6.13□□□□□ -1.43
ACTN1-220ENST00000556433 PMAIP1Q13794 54 aa5.8□□□□□ -1.48
ACTN1-220ENST00000556433 LCE1EQ5T753 118 aa5.79□□□□□ -1.48
ACTN1-220ENST00000556433 PRO0628Q9UI54 55 aa5.55□□□□□ -1.52
ACTN1-220ENST00000556433 SVIPQ8NHG7 77 aa5.54□□□□□ -1.52
ACTN1-220ENST00000556433 LCE1BQ5T7P3 118 aa5.51□□□□□ -1.53
ACTN1-220ENST00000556433 PRAC1Q96KF2 57 aa5.51□□□□□ -1.53
ACTN1-220ENST00000556433 KRTAP4-2Q9BYR5 136 aa5.49□□□□□ -1.53
ACTN1-220ENST00000556433 LCE1CQ5T751 118 aa5.37□□□□□ -1.55
ACTN1-220ENST00000556433 KTN1-AS1Q86SY8 53 aa5.27□□□□□ -1.57
ACTN1-220ENST00000556433 KRTAP4-12Q9BQ66 201 aa5.1□□□□□ -1.59
ACTN1-220ENST00000556433 LCE3DQ9BYE3 92 aa5□□□□□ -1.61
ACTN1-220ENST00000556433 KRTAP5-11Q6L8G4 156 aa4.87□□□□□ -1.63
ACTN1-220ENST00000556433 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.85□□□□□ -1.63
ACTN1-220ENST00000556433 LCE1FQ5T754 118 aa4.81□□□□□ -1.64
ACTN1-220ENST00000556433 H3BS24 57 aa4.76□□□□□ -1.65
ACTN1-220ENST00000556433 LCE3EQ5T5B0 92 aa4.67□□□□□ -1.66
ACTN1-220ENST00000556433 LUZP6Q538Z0 58 aa4.65□□□□□ -1.67
ACTN1-220ENST00000556433 PHGR1C9JFL3 82 aa4.55□□□□□ -1.68
ACTN1-220ENST00000556433 KRTAP21-2Q3LI59 83 aa4.47□□□□□ -1.69
ACTN1-220ENST00000556433 A0A0A0MQY5 61 aa4.26□□□□□ -1.73
ACTN1-220ENST00000556433 KRTAP4-4Q9BYR3 166 aa4.17□□□□□ -1.74
ACTN1-220ENST00000556433 MUC19Q7Z5P9 8384 aa3.98□□□□□ -1.77
ACTN1-220ENST00000556433 NDUFAF8A1L188 74 aa3.9□□□□□ -1.79
ACTN1-220ENST00000556433 KRTAP21-1Q3LI58 79 aa3.47□□□□□ -1.85
ACTN1-220ENST00000556433 PRM1P04553 51 aa3.37□□□□□ -1.87
ACTN1-220ENST00000556433 INE1O15225 51 aa3.2□□□□□ -1.9
ACTN1-220ENST00000556433 MUC16Q8WXI7 14507 aa2.77□□□□□ -1.97
Retrieved 78 of 20,778 RNA–protein pairs in 5.6 ms