RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 SPRR2FQ96RM1 72 aa5.35□□□□□ -1.55
VPS33B-205ENST00000556096 MDN1Q9NU22 5596 aa5.31□□□□□ -1.56
VPS33B-205ENST00000556096 MT1EP04732 61 aa5.3□□□□□ -1.56
VPS33B-205ENST00000556096 KRTAP19-4Q3LI73 84 aa5.28□□□□□ -1.56
VPS33B-205ENST00000556096 LUZP6Q538Z0 58 aa5.28□□□□□ -1.56
VPS33B-205ENST00000556096 KRTAP20-1Q3LI63 56 aa5.26□□□□□ -1.57
VPS33B-205ENST00000556096 NDUFAF8A1L188 74 aa5.25□□□□□ -1.57
VPS33B-205ENST00000556096 LCE3CQ5T5A8 94 aa5.24□□□□□ -1.57
VPS33B-205ENST00000556096 MT1LQ93083 61 aa5.22□□□□□ -1.57
VPS33B-205ENST00000556096 SPRR2EP22531 72 aa5.19□□□□□ -1.58
VPS33B-205ENST00000556096 SPRR2BP35325 72 aa5.19□□□□□ -1.58
VPS33B-205ENST00000556096 SPRR2AP35326 72 aa5.19□□□□□ -1.58
VPS33B-205ENST00000556096 H3BS24 57 aa5.14□□□□□ -1.59
VPS33B-205ENST00000556096 LCE1AQ5T7P2 110 aa5.14□□□□□ -1.59
VPS33B-205ENST00000556096 KRTAP2-3P0C7H8 128 aa5.13□□□□□ -1.59
VPS33B-205ENST00000556096 KRTAP2-4Q9BYR9 128 aa5.13□□□□□ -1.59
VPS33B-205ENST00000556096 KRTAP19-3Q7Z4W3 81 aa5.06□□□□□ -1.6
VPS33B-205ENST00000556096 MT1GP13640 62 aa5.05□□□□□ -1.6
VPS33B-205ENST00000556096 KRTAP4-7Q9BYR0 210 aa5.05□□□□□ -1.6
VPS33B-205ENST00000556096 SPRR2DP22532 72 aa5□□□□□ -1.61
VPS33B-205ENST00000556096 LCE5AQ5TCM9 118 aa4.97□□□□□ -1.61
VPS33B-205ENST00000556096 MT1MQ8N339 61 aa4.97□□□□□ -1.61
VPS33B-205ENST00000556096 KRTAP2-2Q9BYT5 123 aa4.97□□□□□ -1.61
VPS33B-205ENST00000556096 KRTAP2-1Q9BYU5 128 aa4.97□□□□□ -1.61
VPS33B-205ENST00000556096 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
VPS33B-205ENST00000556096 KRTAP4-3Q9BYR4 195 aa4.87□□□□□ -1.63
VPS33B-205ENST00000556096 LCE3BQ5TA77 95 aa4.86□□□□□ -1.63
VPS33B-205ENST00000556096 DSTQ03001 7570 aaKnown RBP4.8□□□□□ -1.64
VPS33B-205ENST00000556096 LOC100996750A0A140TA64 210 aa4.73□□□□□ -1.65
VPS33B-205ENST00000556096 A0A0A0MQY5 61 aa4.66□□□□□ -1.66
VPS33B-205ENST00000556096 KRTAP5-5Q701N2 237 aaPredicted RBP4.49□□□□□ -1.69
VPS33B-205ENST00000556096 KRTAP4-9Q9BYQ8 210 aa4.48□□□□□ -1.69
VPS33B-205ENST00000556096 LCE4AQ5TA78 99 aa4.45□□□□□ -1.7
VPS33B-205ENST00000556096 MT1AP04731 61 aa4.43□□□□□ -1.7
VPS33B-205ENST00000556096 MT4P47944 62 aa4.4□□□□□ -1.71
VPS33B-205ENST00000556096 LCE1DQ5T752 114 aa4.39□□□□□ -1.71
VPS33B-205ENST00000556096 KRTAP6-1Q3LI64 71 aa4.38□□□□□ -1.71
VPS33B-205ENST00000556096 KRTAP5-4Q6L8H1 288 aa4.37□□□□□ -1.71
VPS33B-205ENST00000556096 GPR98Q8WXG9 6306 aa4.37□□□□□ -1.71
VPS33B-205ENST00000556096 INE1O15225 51 aa4.36□□□□□ -1.71
VPS33B-205ENST00000556096 HMCN1Q96RW7 5635 aa4.32□□□□□ -1.72
VPS33B-205ENST00000556096 KRTAP4-6Q9BYQ5 205 aa4.3□□□□□ -1.72
VPS33B-205ENST00000556096 SYNE1Q8NF91 8797 aaKnown RBP4.25□□□□□ -1.73
VPS33B-205ENST00000556096 KRTAP9-4Q9BYQ2 154 aa4.21□□□□□ -1.73
VPS33B-205ENST00000556096 AHNAK2Q8IVF2 5795 aa4.18□□□□□ -1.74
VPS33B-205ENST00000556096 KRTAP12-4P60329 112 aa4.16□□□□□ -1.74
VPS33B-205ENST00000556096 KRTAP20-2Q3LI61 65 aa4.14□□□□□ -1.75
VPS33B-205ENST00000556096 KRTAP5-10Q6L8G5 202 aa4.1□□□□□ -1.75
VPS33B-205ENST00000556096 MT3P25713 68 aa4.02□□□□□ -1.77
VPS33B-205ENST00000556096 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
VPS33B-205ENST00000556096 KRTAP5-3Q6L8H2 238 aa4.01□□□□□ -1.77
VPS33B-205ENST00000556096 KRTAP5-7Q6L8G8 165 aa3.97□□□□□ -1.77
VPS33B-205ENST00000556096 LCE3DQ9BYE3 92 aa3.95□□□□□ -1.78
VPS33B-205ENST00000556096 KRTAP5-2Q701N4 177 aa3.9□□□□□ -1.79
VPS33B-205ENST00000556096 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
VPS33B-205ENST00000556096 KRTAP4-11Q9BYQ6 195 aa3.73□□□□□ -1.81
VPS33B-205ENST00000556096 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
VPS33B-205ENST00000556096 KRTAP5-8O75690 187 aa3.59□□□□□ -1.83
VPS33B-205ENST00000556096 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
VPS33B-205ENST00000556096 KRTAP9-9Q9BYP9 154 aa3.46□□□□□ -1.86
VPS33B-205ENST00000556096 AHNAKQ09666 5890 aaKnown RBP3.45□□□□□ -1.86
VPS33B-205ENST00000556096 MUC5BQ9HC84 5762 aaPredicted RBP3.45□□□□□ -1.86
VPS33B-205ENST00000556096 KRTAP5-1Q6L8H4 278 aa3.44□□□□□ -1.86
VPS33B-205ENST00000556096 MUC5ACP98088 5654 aa3.43□□□□□ -1.86
VPS33B-205ENST00000556096 PRM1P04553 51 aa3.42□□□□□ -1.86
VPS33B-205ENST00000556096 LCE1BQ5T7P3 118 aa3.26□□□□□ -1.89
VPS33B-205ENST00000556096 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
VPS33B-205ENST00000556096 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
VPS33B-205ENST00000556096 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.04□□□□□ -1.92
VPS33B-205ENST00000556096 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
VPS33B-205ENST00000556096 KRTAP4-12Q9BQ66 201 aa2.87□□□□□ -1.95
VPS33B-205ENST00000556096 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
VPS33B-205ENST00000556096 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
VPS33B-205ENST00000556096 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
VPS33B-205ENST00000556096 PHGR1C9JFL3 82 aa2.45□□□□□ -2.02
VPS33B-205ENST00000556096 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
VPS33B-205ENST00000556096 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
VPS33B-205ENST00000556096 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 113 ms