RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	KRTAP19-3	Q7Z4W3	81 aa		4.5	□□□□□ -1.69
ABCD4-223	ENST00000555904	MDN1	Q9NU22	5596 aa		4.49	□□□□□ -1.69
ABCD4-223	ENST00000555904	MT1L	Q93083	61 aa		4.47	□□□□□ -1.69
ABCD4-223	ENST00000555904	NEB	P20929	6669 aa		4.46	□□□□□ -1.7
ABCD4-223	ENST00000555904	SPRR2D	P22532	72 aa		4.46	□□□□□ -1.7
ABCD4-223	ENST00000555904	MT1G	P13640	62 aa		4.44	□□□□□ -1.7
ABCD4-223	ENST00000555904	LCE5A	Q5TCM9	118 aa		4.44	□□□□□ -1.7
ABCD4-223	ENST00000555904	KRTAP15-1	Q3LI76	137 aa		4.42	□□□□□ -1.7
ABCD4-223	ENST00000555904	KTN1-AS1	Q86SY8	53 aa		4.42	□□□□□ -1.7
ABCD4-223	ENST00000555904	PRAC1	Q96KF2	57 aa		4.39	□□□□□ -1.71
ABCD4-223	ENST00000555904	KRTAP19-4	Q3LI73	84 aa		4.37	□□□□□ -1.71
ABCD4-223	ENST00000555904	MT1M	Q8N339	61 aa		4.36	□□□□□ -1.71
ABCD4-223	ENST00000555904	KRTAP20-1	Q3LI63	56 aa		4.34	□□□□□ -1.71
ABCD4-223	ENST00000555904	KRTAP2-3	P0C7H8	128 aa		4.32	□□□□□ -1.72
ABCD4-223	ENST00000555904	KRTAP2-4	Q9BYR9	128 aa		4.32	□□□□□ -1.72
ABCD4-223	ENST00000555904	LCE3B	Q5TA77	95 aa		4.29	□□□□□ -1.72
ABCD4-223	ENST00000555904	LCE3C	Q5T5A8	94 aa		4.26	□□□□□ -1.73
ABCD4-223	ENST00000555904	SVIP	Q8NHG7	77 aa		4.24	□□□□□ -1.73
ABCD4-223	ENST00000555904	KRTAP4-7	Q9BYR0	210 aa		4.24	□□□□□ -1.73
ABCD4-223	ENST00000555904	KRTAP4-3	Q9BYR4	195 aa		4.22	□□□□□ -1.73
ABCD4-223	ENST00000555904	KRTAP2-2	Q9BYT5	123 aa		4.2	□□□□□ -1.74
ABCD4-223	ENST00000555904	KRTAP2-1	Q9BYU5	128 aa		4.2	□□□□□ -1.74
ABCD4-223	ENST00000555904	DST	Q03001	7570 aa	Known RBP	4.15	□□□□□ -1.74
ABCD4-223	ENST00000555904	LOC100996750	A0A140TA64	210 aa		4	□□□□□ -1.77
ABCD4-223	ENST00000555904	LCE4A	Q5TA78	99 aa		3.96	□□□□□ -1.78
ABCD4-223	ENST00000555904	KRTAP9-6	A8MVA2	160 aa		3.95	□□□□□ -1.78
ABCD4-223	ENST00000555904	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.93	□□□□□ -1.78
ABCD4-223	ENST00000555904	SPRR5	A0A1B0GTR4	108 aa		3.9	□□□□□ -1.79
ABCD4-223	ENST00000555904	KRTAP5-4	Q6L8H1	288 aa		3.9	□□□□□ -1.79
ABCD4-223	ENST00000555904	MT4	P47944	62 aa		3.86	□□□□□ -1.79
ABCD4-223	ENST00000555904	KRTAP4-9	Q9BYQ8	210 aa		3.86	□□□□□ -1.79
ABCD4-223	ENST00000555904	LCE1D	Q5T752	114 aa		3.83	□□□□□ -1.8
ABCD4-223	ENST00000555904	MT1A	P04731	61 aa		3.81	□□□□□ -1.8
ABCD4-223	ENST00000555904	KRTAP12-4	P60329	112 aa		3.81	□□□□□ -1.8
ABCD4-223	ENST00000555904	LUZP6	Q538Z0	58 aa		3.75	□□□□□ -1.81
ABCD4-223	ENST00000555904	KRTAP4-6	Q9BYQ5	205 aa		3.75	□□□□□ -1.81
ABCD4-223	ENST00000555904	KRTAP6-1	Q3LI64	71 aa		3.74	□□□□□ -1.81
ABCD4-223	ENST00000555904	HMCN1	Q96RW7	5635 aa		3.69	□□□□□ -1.82
ABCD4-223	ENST00000555904	KRTAP20-2	Q3LI61	65 aa		3.68	□□□□□ -1.82
ABCD4-223	ENST00000555904	KRTAP9-4	Q9BYQ2	154 aa		3.63	□□□□□ -1.83
ABCD4-223	ENST00000555904	SYNE1	Q8NF91	8797 aa	Known RBP	3.61	□□□□□ -1.83
ABCD4-223	ENST00000555904	KRTAP6-2	Q3LI66	62 aa		3.53	□□□□□ -1.84
ABCD4-223	ENST00000555904	KRTAP5-3	Q6L8H2	238 aa		3.53	□□□□□ -1.84
ABCD4-223	ENST00000555904	MT3	P25713	68 aa		3.49	□□□□□ -1.85
ABCD4-223	ENST00000555904	KRTAP5-2	Q701N4	177 aa		3.49	□□□□□ -1.85
ABCD4-223	ENST00000555904	NDUFAF8	A1L188	74 aa		3.36	□□□□□ -1.87
ABCD4-223	ENST00000555904	AHNAK2	Q8IVF2	5795 aa		3.36	□□□□□ -1.87
ABCD4-223	ENST00000555904	KRTAP5-10	Q6L8G5	202 aa		3.34	□□□□□ -1.87
ABCD4-223	ENST00000555904	GPR98	Q8WXG9	6306 aa		3.31	□□□□□ -1.88
ABCD4-223	ENST00000555904	KRTAP4-11	Q9BYQ6	195 aa		3.27	□□□□□ -1.89
ABCD4-223	ENST00000555904	KRTAP5-7	Q6L8G8	165 aa		3.16	□□□□□ -1.9
ABCD4-223	ENST00000555904	LCE3D	Q9BYE3	92 aa		3.16	□□□□□ -1.9
ABCD4-223	ENST00000555904	OBSCN	Q5VST9	7968 aa		3.16	□□□□□ -1.9
ABCD4-223	ENST00000555904	KRTAP5-8	O75690	187 aa		3.13	□□□□□ -1.91
ABCD4-223	ENST00000555904	LCE1E	Q5T753	118 aa		3.1	□□□□□ -1.91
ABCD4-223	ENST00000555904	KRTAP5-1	Q6L8H4	278 aa		3.05	□□□□□ -1.92
ABCD4-223	ENST00000555904	LCE3E	Q5T5B0	92 aa		3.04	□□□□□ -1.92
ABCD4-223	ENST00000555904	KRTAP9-9	Q9BYP9	154 aa		2.96	□□□□□ -1.94
ABCD4-223	ENST00000555904		A0A0A0MQY5	61 aa		2.93	□□□□□ -1.94
ABCD4-223	ENST00000555904	LCE1B	Q5T7P3	118 aa		2.91	□□□□□ -1.94
ABCD4-223	ENST00000555904	LCE1C	Q5T751	118 aa		2.88	□□□□□ -1.95
ABCD4-223	ENST00000555904	KRTAP4-2	Q9BYR5	136 aa		2.85	□□□□□ -1.95
ABCD4-223	ENST00000555904	MUC5AC	P98088	5654 aa		2.84	□□□□□ -1.95
ABCD4-223	ENST00000555904		H3BS24	57 aa		2.81	□□□□□ -1.96
ABCD4-223	ENST00000555904	INE1	O15225	51 aa		2.8	□□□□□ -1.96
ABCD4-223	ENST00000555904	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.71	□□□□□ -1.98
ABCD4-223	ENST00000555904	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.64	□□□□□ -1.99
ABCD4-223	ENST00000555904	AHNAK	Q09666	5890 aa	Known RBP	2.64	□□□□□ -1.99
ABCD4-223	ENST00000555904	KRTAP5-11	Q6L8G4	156 aa		2.57	□□□□□ -2
ABCD4-223	ENST00000555904	PRM1	P04553	51 aa		2.5	□□□□□ -2.01
ABCD4-223	ENST00000555904	KRTAP21-2	Q3LI59	83 aa		2.46	□□□□□ -2.02
ABCD4-223	ENST00000555904	KRTAP4-12	Q9BQ66	201 aa		2.46	□□□□□ -2.02
ABCD4-223	ENST00000555904	LCE1F	Q5T754	118 aa		2.41	□□□□□ -2.02
ABCD4-223	ENST00000555904	PHGR1	C9JFL3	82 aa		2.2	□□□□□ -2.06
ABCD4-223	ENST00000555904	KRTAP4-4	Q9BYR3	166 aa		2.2	□□□□□ -2.06
ABCD4-223	ENST00000555904	MUC19	Q7Z5P9	8384 aa		1.9	□□□□□ -2.11
ABCD4-223	ENST00000555904	KRTAP21-1	Q3LI58	79 aa		1.49	□□□□□ -2.17
ABCD4-223	ENST00000555904	MUC16	Q8WXI7	14507 aa		1.35	□□□□□ -2.19

Retrieved 78 of 20,778 RNA–protein pairs in 198.4 ms