RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 MT1EP04732 61 aa4.41□□□□□ -1.7
VRK1-204ENST00000555351 KRTAP19-3Q7Z4W3 81 aa4.4□□□□□ -1.71
VRK1-204ENST00000555351 ATP5EP56381 51 aaPredicted RBP4.35□□□□□ -1.71
VRK1-204ENST00000555351 TMEM258P61165 79 aa4.34□□□□□ -1.71
VRK1-204ENST00000555351 CCDC179H3BU77 68 aa4.32□□□□□ -1.72
VRK1-204ENST00000555351 MT1GP13640 62 aa4.31□□□□□ -1.72
VRK1-204ENST00000555351 PRR15LQ9BU68 103 aa4.31□□□□□ -1.72
VRK1-204ENST00000555351 KRTAP19-5Q3LI72 72 aa4.3□□□□□ -1.72
VRK1-204ENST00000555351 A8MU10 97 aa4.29□□□□□ -1.72
VRK1-204ENST00000555351 PP632Q6XCG6 107 aa4.29□□□□□ -1.72
VRK1-204ENST00000555351 TNP1P09430 55 aa4.26□□□□□ -1.73
VRK1-204ENST00000555351 DSTQ03001 7570 aaKnown RBP4.26□□□□□ -1.73
VRK1-204ENST00000555351 LINC01558Q9Y6Z2 57 aa4.25□□□□□ -1.73
VRK1-204ENST00000555351 C10orf95Q9H7T3 257 aa4.23□□□□□ -1.73
VRK1-204ENST00000555351 MT1LQ93083 61 aa4.21□□□□□ -1.74
VRK1-204ENST00000555351 LCE3AQ5TA76 89 aa4.2□□□□□ -1.74
VRK1-204ENST00000555351 MT1MQ8N339 61 aa4.2□□□□□ -1.74
VRK1-204ENST00000555351 PRO0628Q9UI54 55 aa4.19□□□□□ -1.74
VRK1-204ENST00000555351 UQCR11O14957 56 aa4.16□□□□□ -1.74
VRK1-204ENST00000555351 GPR98Q8WXG9 6306 aa4.07□□□□□ -1.76
VRK1-204ENST00000555351 KRTAP12-3P60328 96 aa4.07□□□□□ -1.76
VRK1-204ENST00000555351 KRTAP5-4Q6L8H1 288 aa4.06□□□□□ -1.76
VRK1-204ENST00000555351 V9GYY9 64 aa4.05□□□□□ -1.76
VRK1-204ENST00000555351 KRTAP25-1Q3LHN0 102 aa4.04□□□□□ -1.76
VRK1-204ENST00000555351 MIR22HGQ0VDD5 57 aa4.03□□□□□ -1.76
VRK1-204ENST00000555351 KRTAP4-3Q9BYR4 195 aa4.03□□□□□ -1.76
VRK1-204ENST00000555351 K7ERS5 55 aa4.01□□□□□ -1.77
VRK1-204ENST00000555351 MT4P47944 62 aa4.01□□□□□ -1.77
VRK1-204ENST00000555351 KRTAP5-3Q6L8H2 238 aa4.01□□□□□ -1.77
VRK1-204ENST00000555351 Q1T7F1 81 aa3.98□□□□□ -1.77
VRK1-204ENST00000555351 HMCN1Q96RW7 5635 aa3.97□□□□□ -1.77
VRK1-204ENST00000555351 PMAIP1Q13794 54 aa3.94□□□□□ -1.78
VRK1-204ENST00000555351 BRK1Q8WUW1 75 aa3.93□□□□□ -1.78
VRK1-204ENST00000555351 PSPHP1O15172 72 aa3.9□□□□□ -1.79
VRK1-204ENST00000555351 KRTAP5-5Q701N2 237 aaPredicted RBP3.88□□□□□ -1.79
VRK1-204ENST00000555351 AHNAK2Q8IVF2 5795 aa3.86□□□□□ -1.79
VRK1-204ENST00000555351 SPRR5A0A1B0GTR4 108 aa3.83□□□□□ -1.8
VRK1-204ENST00000555351 KRTAP5-10Q6L8G5 202 aa3.83□□□□□ -1.8
VRK1-204ENST00000555351 KRTAP20-2Q3LI61 65 aa3.8□□□□□ -1.8
VRK1-204ENST00000555351 KTN1-AS1Q86SY8 53 aa3.8□□□□□ -1.8
VRK1-204ENST00000555351 A6NED7 52 aa3.79□□□□□ -1.8
VRK1-204ENST00000555351 KRTAP12-4P60329 112 aa3.79□□□□□ -1.8
VRK1-204ENST00000555351 CDC42SE1Q9NRR8 79 aa3.77□□□□□ -1.81
VRK1-204ENST00000555351 LCE3CQ5T5A8 94 aa3.75□□□□□ -1.81
VRK1-204ENST00000555351 KRTAP5-7Q6L8G8 165 aa3.71□□□□□ -1.82
VRK1-204ENST00000555351 PRAC1Q96KF2 57 aa3.71□□□□□ -1.82
VRK1-204ENST00000555351 ROMO1P60602 79 aa3.7□□□□□ -1.82
VRK1-204ENST00000555351 MT1AP04731 61 aa3.6□□□□□ -1.83
VRK1-204ENST00000555351 SYNE1Q8NF91 8797 aaKnown RBP3.58□□□□□ -1.84
VRK1-204ENST00000555351 KRTAP5-2Q701N4 177 aa3.55□□□□□ -1.84
VRK1-204ENST00000555351 KRTAP6-1Q3LI64 71 aa3.54□□□□□ -1.84
VRK1-204ENST00000555351 MT3P25713 68 aa3.53□□□□□ -1.84
VRK1-204ENST00000555351 KRTAP9-6A8MVA2 160 aa3.5□□□□□ -1.85
VRK1-204ENST00000555351 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
VRK1-204ENST00000555351 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
VRK1-204ENST00000555351 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
VRK1-204ENST00000555351 KRTAP5-8O75690 187 aa3.36□□□□□ -1.87
VRK1-204ENST00000555351 OBSCNQ5VST9 7968 aa3.23□□□□□ -1.89
VRK1-204ENST00000555351 AHNAKQ09666 5890 aaKnown RBP3.21□□□□□ -1.89
VRK1-204ENST00000555351 MUC5BQ9HC84 5762 aaPredicted RBP3.2□□□□□ -1.9
VRK1-204ENST00000555351 MUC5ACP98088 5654 aa3.19□□□□□ -1.9
VRK1-204ENST00000555351 KRTAP5-1Q6L8H4 278 aa3.17□□□□□ -1.9
VRK1-204ENST00000555351 LCE1EQ5T753 118 aa3.1□□□□□ -1.91
VRK1-204ENST00000555351 KRTAP5-11Q6L8G4 156 aa3.05□□□□□ -1.92
VRK1-204ENST00000555351 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.97□□□□□ -1.93
VRK1-204ENST00000555351 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
VRK1-204ENST00000555351 LUZP6Q538Z0 58 aa2.9□□□□□ -1.95
VRK1-204ENST00000555351 LCE1CQ5T751 118 aa2.84□□□□□ -1.95
VRK1-204ENST00000555351 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
VRK1-204ENST00000555351 LCE3DQ9BYE3 92 aa2.71□□□□□ -1.98
VRK1-204ENST00000555351 INE1O15225 51 aa2.67□□□□□ -1.98
VRK1-204ENST00000555351 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
VRK1-204ENST00000555351 KRTAP21-2Q3LI59 83 aa2.35□□□□□ -2.03
VRK1-204ENST00000555351 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
VRK1-204ENST00000555351 MUC19Q7Z5P9 8384 aa1.98□□□□□ -2.09
VRK1-204ENST00000555351 PRM1P04553 51 aa1.85□□□□□ -2.11
VRK1-204ENST00000555351 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
VRK1-204ENST00000555351 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 12.7 ms