RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 KRTAP12-3P60328 96 aa6.62□□□□□ -1.35
SHOX-204ENST00000554971 SPRR2FQ96RM1 72 aa6.56□□□□□ -1.36
SHOX-204ENST00000554971 NEBP20929 6669 aa6.51□□□□□ -1.37
SHOX-204ENST00000554971 KRTAP19-7Q3SYF9 63 aa6.41□□□□□ -1.38
SHOX-204ENST00000554971 LCE1AQ5T7P2 110 aa6.37□□□□□ -1.39
SHOX-204ENST00000554971 SPRR2EP22531 72 aa6.34□□□□□ -1.39
SHOX-204ENST00000554971 SPRR2BP35325 72 aa6.34□□□□□ -1.39
SHOX-204ENST00000554971 SPRR2AP35326 72 aa6.34□□□□□ -1.39
SHOX-204ENST00000554971 KRTAP19-5Q3LI72 72 aa6.33□□□□□ -1.4
SHOX-204ENST00000554971 MT1EP04732 61 aa6.31□□□□□ -1.4
SHOX-204ENST00000554971 KRTAP19-4Q3LI73 84 aa6.29□□□□□ -1.4
SHOX-204ENST00000554971 LCE3CQ5T5A8 94 aa6.24□□□□□ -1.41
SHOX-204ENST00000554971 KRTAP19-3Q7Z4W3 81 aa6.15□□□□□ -1.42
SHOX-204ENST00000554971 LCE5AQ5TCM9 118 aa6.14□□□□□ -1.43
SHOX-204ENST00000554971 SPRR2DP22532 72 aa6.11□□□□□ -1.43
SHOX-204ENST00000554971 DSTQ03001 7570 aaKnown RBP6.1□□□□□ -1.43
SHOX-204ENST00000554971 MT1LQ93083 61 aa6.09□□□□□ -1.43
SHOX-204ENST00000554971 KRTAP20-1Q3LI63 56 aa6.06□□□□□ -1.44
SHOX-204ENST00000554971 INE1O15225 51 aa6.04□□□□□ -1.44
SHOX-204ENST00000554971 MT1GP13640 62 aa6.03□□□□□ -1.44
SHOX-204ENST00000554971 KRTAP2-3P0C7H8 128 aa6.01□□□□□ -1.45
SHOX-204ENST00000554971 KRTAP2-4Q9BYR9 128 aa6.01□□□□□ -1.45
SHOX-204ENST00000554971 MT1MQ8N339 61 aa5.97□□□□□ -1.45
SHOX-204ENST00000554971 LCE3BQ5TA77 95 aa5.93□□□□□ -1.46
SHOX-204ENST00000554971 KRTAP4-7Q9BYR0 210 aa5.87□□□□□ -1.47
SHOX-204ENST00000554971 KRTAP4-3Q9BYR4 195 aa5.87□□□□□ -1.47
SHOX-204ENST00000554971 KRTAP9-6A8MVA2 160 aa5.86□□□□□ -1.47
SHOX-204ENST00000554971 KRTAP2-2Q9BYT5 123 aa5.85□□□□□ -1.47
SHOX-204ENST00000554971 KRTAP2-1Q9BYU5 128 aa5.85□□□□□ -1.47
SHOX-204ENST00000554971 LOC100996750A0A140TA64 210 aa5.54□□□□□ -1.52
SHOX-204ENST00000554971 KRTAP5-5Q701N2 237 aaPredicted RBP5.47□□□□□ -1.53
SHOX-204ENST00000554971 KRTAP5-4Q6L8H1 288 aa5.46□□□□□ -1.53
SHOX-204ENST00000554971 KRTAP4-9Q9BYQ8 210 aa5.46□□□□□ -1.54
SHOX-204ENST00000554971 HMCN1Q96RW7 5635 aa5.43□□□□□ -1.54
SHOX-204ENST00000554971 LCE4AQ5TA78 99 aa5.41□□□□□ -1.54
SHOX-204ENST00000554971 LCE1DQ5T752 114 aa5.37□□□□□ -1.55
SHOX-204ENST00000554971 MT4P47944 62 aa5.35□□□□□ -1.55
SHOX-204ENST00000554971 SYNE1Q8NF91 8797 aaKnown RBP5.32□□□□□ -1.56
SHOX-204ENST00000554971 KRTAP4-6Q9BYQ5 205 aa5.29□□□□□ -1.56
SHOX-204ENST00000554971 MT1AP04731 61 aa5.16□□□□□ -1.58
SHOX-204ENST00000554971 KRTAP6-1Q3LI64 71 aa5.16□□□□□ -1.58
SHOX-204ENST00000554971 KRTAP12-4P60329 112 aa5.13□□□□□ -1.59
SHOX-204ENST00000554971 KRTAP20-2Q3LI61 65 aa5.12□□□□□ -1.59
SHOX-204ENST00000554971 AHNAK2Q8IVF2 5795 aa5.02□□□□□ -1.61
SHOX-204ENST00000554971 KRTAP5-3Q6L8H2 238 aa4.97□□□□□ -1.61
SHOX-204ENST00000554971 KRTAP9-4Q9BYQ2 154 aa4.95□□□□□ -1.62
SHOX-204ENST00000554971 GPR98Q8WXG9 6306 aa4.9□□□□□ -1.62
SHOX-204ENST00000554971 KRTAP5-2Q701N4 177 aa4.87□□□□□ -1.63
SHOX-204ENST00000554971 KRTAP6-2Q3LI66 62 aa4.83□□□□□ -1.64
SHOX-204ENST00000554971 KRTAP5-10Q6L8G5 202 aa4.79□□□□□ -1.64
SHOX-204ENST00000554971 LCE3DQ9BYE3 92 aa4.79□□□□□ -1.64
SHOX-204ENST00000554971 LCE3EQ5T5B0 92 aa4.73□□□□□ -1.65
SHOX-204ENST00000554971 OBSCNQ5VST9 7968 aa4.73□□□□□ -1.65
SHOX-204ENST00000554971 MT3P25713 68 aa4.68□□□□□ -1.66
SHOX-204ENST00000554971 KRTAP4-11Q9BYQ6 195 aa4.56□□□□□ -1.68
SHOX-204ENST00000554971 KRTAP5-7Q6L8G8 165 aa4.5□□□□□ -1.69
SHOX-204ENST00000554971 KRTAP5-8O75690 187 aa4.42□□□□□ -1.7
SHOX-204ENST00000554971 PRM1P04553 51 aa4.34□□□□□ -1.71
SHOX-204ENST00000554971 KRTAP5-1Q6L8H4 278 aa4.31□□□□□ -1.72
SHOX-204ENST00000554971 MUC5ACP98088 5654 aa4.3□□□□□ -1.72
SHOX-204ENST00000554971 LCE1EQ5T753 118 aa4.21□□□□□ -1.74
SHOX-204ENST00000554971 MUC5BQ9HC84 5762 aaPredicted RBP4.15□□□□□ -1.75
SHOX-204ENST00000554971 KRTAP9-9Q9BYP9 154 aa4.05□□□□□ -1.76
SHOX-204ENST00000554971 KRTAP4-2Q9BYR5 136 aa3.99□□□□□ -1.77
SHOX-204ENST00000554971 AHNAKQ09666 5890 aaKnown RBP3.97□□□□□ -1.77
SHOX-204ENST00000554971 LCE1BQ5T7P3 118 aa3.93□□□□□ -1.78
SHOX-204ENST00000554971 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
SHOX-204ENST00000554971 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
SHOX-204ENST00000554971 KRTAP5-11Q6L8G4 156 aa3.52□□□□□ -1.85
SHOX-204ENST00000554971 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
SHOX-204ENST00000554971 KRTAP21-2Q3LI59 83 aa3.41□□□□□ -1.86
SHOX-204ENST00000554971 LCE1FQ5T754 118 aa3.29□□□□□ -1.88
SHOX-204ENST00000554971 KRTAP4-4Q9BYR3 166 aa3.06□□□□□ -1.92
SHOX-204ENST00000554971 PHGR1C9JFL3 82 aa3.04□□□□□ -1.92
SHOX-204ENST00000554971 MUC19Q7Z5P9 8384 aa2.89□□□□□ -1.95
SHOX-204ENST00000554971 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
SHOX-204ENST00000554971 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 123 ms