RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 SPRR2BP35325 72 aa5.23□□□□□ -1.57
SHMT2-210ENST00000553950 SPRR2AP35326 72 aa5.23□□□□□ -1.57
SHMT2-210ENST00000553950 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
SHMT2-210ENST00000553950 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.58
SHMT2-210ENST00000553950 KRTAP15-1Q3LI76 137 aa5.2□□□□□ -1.58
SHMT2-210ENST00000553950 LCE1AQ5T7P2 110 aa5.2□□□□□ -1.58
SHMT2-210ENST00000553950 MT1LQ93083 61 aa5.18□□□□□ -1.58
SHMT2-210ENST00000553950 MDN1Q9NU22 5596 aa5.17□□□□□ -1.58
SHMT2-210ENST00000553950 NEBP20929 6669 aa5.15□□□□□ -1.59
SHMT2-210ENST00000553950 MT1GP13640 62 aa5.14□□□□□ -1.59
SHMT2-210ENST00000553950 LCE5AQ5TCM9 118 aa5.13□□□□□ -1.59
SHMT2-210ENST00000553950 KRTAP20-1Q3LI63 56 aa5.08□□□□□ -1.6
SHMT2-210ENST00000553950 SPRR2DP22532 72 aa5.06□□□□□ -1.6
SHMT2-210ENST00000553950 MT1MQ8N339 61 aa5.04□□□□□ -1.6
SHMT2-210ENST00000553950 LCE3CQ5T5A8 94 aa4.99□□□□□ -1.61
SHMT2-210ENST00000553950 KRTAP2-3P0C7H8 128 aa4.94□□□□□ -1.62
SHMT2-210ENST00000553950 KRTAP2-4Q9BYR9 128 aa4.94□□□□□ -1.62
SHMT2-210ENST00000553950 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
SHMT2-210ENST00000553950 KRTAP4-7Q9BYR0 210 aa4.86□□□□□ -1.63
SHMT2-210ENST00000553950 KRTAP4-3Q9BYR4 195 aa4.81□□□□□ -1.64
SHMT2-210ENST00000553950 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
SHMT2-210ENST00000553950 KRTAP2-1Q9BYU5 128 aa4.78□□□□□ -1.64
SHMT2-210ENST00000553950 SPRR5A0A1B0GTR4 108 aa4.73□□□□□ -1.65
SHMT2-210ENST00000553950 DSTQ03001 7570 aaKnown RBP4.72□□□□□ -1.65
SHMT2-210ENST00000553950 KRTAP9-6A8MVA2 160 aa4.6□□□□□ -1.67
SHMT2-210ENST00000553950 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.67
SHMT2-210ENST00000553950 KRTAP5-5Q701N2 237 aaPredicted RBP4.56□□□□□ -1.68
SHMT2-210ENST00000553950 LUZP6Q538Z0 58 aa4.55□□□□□ -1.68
SHMT2-210ENST00000553950 LCE4AQ5TA78 99 aa4.53□□□□□ -1.68
SHMT2-210ENST00000553950 KRTAP5-4Q6L8H1 288 aa4.5□□□□□ -1.69
SHMT2-210ENST00000553950 MT1AP04731 61 aa4.45□□□□□ -1.7
SHMT2-210ENST00000553950 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
SHMT2-210ENST00000553950 KRTAP4-9Q9BYQ8 210 aa4.37□□□□□ -1.71
SHMT2-210ENST00000553950 MT4P47944 62 aa4.33□□□□□ -1.72
SHMT2-210ENST00000553950 KRTAP6-1Q3LI64 71 aa4.33□□□□□ -1.72
SHMT2-210ENST00000553950 LCE1DQ5T752 114 aa4.32□□□□□ -1.72
SHMT2-210ENST00000553950 GPR98Q8WXG9 6306 aa4.32□□□□□ -1.72
SHMT2-210ENST00000553950 KRTAP4-6Q9BYQ5 205 aa4.23□□□□□ -1.73
SHMT2-210ENST00000553950 HMCN1Q96RW7 5635 aa4.22□□□□□ -1.73
SHMT2-210ENST00000553950 KRTAP20-2Q3LI61 65 aa4.21□□□□□ -1.74
SHMT2-210ENST00000553950 KRTAP9-4Q9BYQ2 154 aa4.21□□□□□ -1.74
SHMT2-210ENST00000553950 SYNE1Q8NF91 8797 aaKnown RBP4.2□□□□□ -1.74
SHMT2-210ENST00000553950 NDUFAF8A1L188 74 aa4.11□□□□□ -1.75
SHMT2-210ENST00000553950 MT3P25713 68 aa4.06□□□□□ -1.76
SHMT2-210ENST00000553950 KRTAP6-2Q3LI66 62 aa4.04□□□□□ -1.76
SHMT2-210ENST00000553950 KRTAP5-3Q6L8H2 238 aa4.04□□□□□ -1.76
SHMT2-210ENST00000553950 KRTAP5-2Q701N4 177 aa4.04□□□□□ -1.76
SHMT2-210ENST00000553950 AHNAK2Q8IVF2 5795 aa3.99□□□□□ -1.77
SHMT2-210ENST00000553950 KRTAP5-10Q6L8G5 202 aa3.94□□□□□ -1.78
SHMT2-210ENST00000553950 KRTAP5-7Q6L8G8 165 aa3.79□□□□□ -1.8
SHMT2-210ENST00000553950 LCE3DQ9BYE3 92 aa3.72□□□□□ -1.81
SHMT2-210ENST00000553950 KRTAP4-11Q9BYQ6 195 aa3.71□□□□□ -1.82
SHMT2-210ENST00000553950 H3BS24 57 aa3.68□□□□□ -1.82
SHMT2-210ENST00000553950 A0A0A0MQY5 61 aa3.67□□□□□ -1.82
SHMT2-210ENST00000553950 OBSCNQ5VST9 7968 aa3.65□□□□□ -1.83
SHMT2-210ENST00000553950 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
SHMT2-210ENST00000553950 LCE3EQ5T5B0 92 aa3.59□□□□□ -1.83
SHMT2-210ENST00000553950 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
SHMT2-210ENST00000553950 INE1O15225 51 aa3.5□□□□□ -1.85
SHMT2-210ENST00000553950 KRTAP5-1Q6L8H4 278 aa3.49□□□□□ -1.85
SHMT2-210ENST00000553950 MUC5ACP98088 5654 aa3.39□□□□□ -1.87
SHMT2-210ENST00000553950 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
SHMT2-210ENST00000553950 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
SHMT2-210ENST00000553950 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
SHMT2-210ENST00000553950 KRTAP4-2Q9BYR5 136 aa3.3□□□□□ -1.88
SHMT2-210ENST00000553950 MUC5BQ9HC84 5762 aaPredicted RBP3.29□□□□□ -1.88
SHMT2-210ENST00000553950 AHNAKQ09666 5890 aaKnown RBP3.29□□□□□ -1.88
SHMT2-210ENST00000553950 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.11□□□□□ -1.91
SHMT2-210ENST00000553950 KRTAP5-11Q6L8G4 156 aa2.99□□□□□ -1.93
SHMT2-210ENST00000553950 PRM1P04553 51 aa2.97□□□□□ -1.93
SHMT2-210ENST00000553950 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
SHMT2-210ENST00000553950 LCE1FQ5T754 118 aa2.8□□□□□ -1.96
SHMT2-210ENST00000553950 KRTAP4-12Q9BQ66 201 aa2.74□□□□□ -1.97
SHMT2-210ENST00000553950 PHGR1C9JFL3 82 aa2.54□□□□□ -2
SHMT2-210ENST00000553950 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
SHMT2-210ENST00000553950 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
SHMT2-210ENST00000553950 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
SHMT2-210ENST00000553950 MUC16Q8WXI7 14507 aa1.64□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 97.1 ms