RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 KRTAP2-2Q9BYT5 123 aa8.27□□□□□ -1.09
TDP1-206ENST00000553569 KRTAP2-1Q9BYU5 128 aa8.27□□□□□ -1.09
TDP1-206ENST00000553569 KRTAP25-1Q3LHN0 102 aa8.21□□□□□ -1.1
TDP1-206ENST00000553569 MT1LQ93083 61 aa8.15□□□□□ -1.1
TDP1-206ENST00000553569 MT1GP13640 62 aa8.14□□□□□ -1.11
TDP1-206ENST00000553569 PP632Q6XCG6 107 aa8.09□□□□□ -1.11
TDP1-206ENST00000553569 KRTAP12-3P60328 96 aa8.08□□□□□ -1.12
TDP1-206ENST00000553569 CDC42SE1Q9NRR8 79 aa8.06□□□□□ -1.12
TDP1-206ENST00000553569 MT1MQ8N339 61 aa8.05□□□□□ -1.12
TDP1-206ENST00000553569 LOC100996750A0A140TA64 210 aa8.03□□□□□ -1.12
TDP1-206ENST00000553569 KRTAP4-6Q9BYQ5 205 aa8.03□□□□□ -1.12
TDP1-206ENST00000553569 ROMO1P60602 79 aa7.92□□□□□ -1.14
TDP1-206ENST00000553569 DSTQ03001 7570 aaKnown RBP7.88□□□□□ -1.15
TDP1-206ENST00000553569 KRTAP4-3Q9BYR4 195 aa7.87□□□□□ -1.15
TDP1-206ENST00000553569 KRTAP23-1A1A580 65 aa7.86□□□□□ -1.15
TDP1-206ENST00000553569 KRTAP4-7Q9BYR0 210 aa7.79□□□□□ -1.16
TDP1-206ENST00000553569 KRTAP15-1Q3LI76 137 aa7.65□□□□□ -1.18
TDP1-206ENST00000553569 KRTAP4-9Q9BYQ8 210 aa7.63□□□□□ -1.19
TDP1-206ENST00000553569 BRK1Q8WUW1 75 aa7.58□□□□□ -1.2
TDP1-206ENST00000553569 KRTAP19-4Q3LI73 84 aa7.54□□□□□ -1.2
TDP1-206ENST00000553569 LCE4AQ5TA78 99 aa7.54□□□□□ -1.2
TDP1-206ENST00000553569 LCE1DQ5T752 114 aa7.48□□□□□ -1.21
TDP1-206ENST00000553569 MT4P47944 62 aa7.47□□□□□ -1.21
TDP1-206ENST00000553569 LCE3CQ5T5A8 94 aa7.46□□□□□ -1.22
TDP1-206ENST00000553569 KRTAP5-4Q6L8H1 288 aa7.44□□□□□ -1.22
TDP1-206ENST00000553569 GPR98Q8WXG9 6306 aa7.41□□□□□ -1.22
TDP1-206ENST00000553569 KRTAP5-5Q701N2 237 aaPredicted RBP7.32□□□□□ -1.24
TDP1-206ENST00000553569 HMCN1Q96RW7 5635 aa7.24□□□□□ -1.25
TDP1-206ENST00000553569 PMAIP1Q13794 54 aa7.11□□□□□ -1.27
TDP1-206ENST00000553569 KRTAP12-4P60329 112 aa7.06□□□□□ -1.28
TDP1-206ENST00000553569 KRTAP9-6A8MVA2 160 aa7.04□□□□□ -1.28
TDP1-206ENST00000553569 KRTAP20-2Q3LI61 65 aa7.04□□□□□ -1.28
TDP1-206ENST00000553569 SPRR5A0A1B0GTR4 108 aa7□□□□□ -1.29
TDP1-206ENST00000553569 KRTAP4-12Q9BQ66 201 aa7□□□□□ -1.29
TDP1-206ENST00000553569 MT1AP04731 61 aa6.94□□□□□ -1.3
TDP1-206ENST00000553569 SYNE1Q8NF91 8797 aaKnown RBP6.93□□□□□ -1.3
TDP1-206ENST00000553569 KRTAP6-1Q3LI64 71 aa6.89□□□□□ -1.31
TDP1-206ENST00000553569 AHNAK2Q8IVF2 5795 aa6.87□□□□□ -1.31
TDP1-206ENST00000553569 PRAC1Q96KF2 57 aa6.83□□□□□ -1.32
TDP1-206ENST00000553569 KRTAP9-9Q9BYP9 154 aa6.81□□□□□ -1.32
TDP1-206ENST00000553569 KRTAP9-4Q9BYQ2 154 aa6.81□□□□□ -1.32
TDP1-206ENST00000553569 PRO0628Q9UI54 55 aa6.81□□□□□ -1.32
TDP1-206ENST00000553569 KRTAP5-3Q6L8H2 238 aa6.79□□□□□ -1.32
TDP1-206ENST00000553569 KRTAP5-10Q6L8G5 202 aa6.76□□□□□ -1.33
TDP1-206ENST00000553569 KRTAP5-2Q701N4 177 aa6.58□□□□□ -1.36
TDP1-206ENST00000553569 KRTAP6-2Q3LI66 62 aa6.52□□□□□ -1.37
TDP1-206ENST00000553569 KTN1-AS1Q86SY8 53 aa6.47□□□□□ -1.37
TDP1-206ENST00000553569 KRTAP5-7Q6L8G8 165 aa6.45□□□□□ -1.38
TDP1-206ENST00000553569 KRTAP4-11Q9BYQ6 195 aa6.33□□□□□ -1.4
TDP1-206ENST00000553569 MT3P25713 68 aa6.32□□□□□ -1.4
TDP1-206ENST00000553569 SVIPQ8NHG7 77 aa6.24□□□□□ -1.41
TDP1-206ENST00000553569 KRTAP4-2Q9BYR5 136 aa6.23□□□□□ -1.41
TDP1-206ENST00000553569 KRTAP5-8O75690 187 aa6.11□□□□□ -1.43
TDP1-206ENST00000553569 OBSCNQ5VST9 7968 aa5.96□□□□□ -1.46
TDP1-206ENST00000553569 KRTAP5-1Q6L8H4 278 aa5.84□□□□□ -1.47
TDP1-206ENST00000553569 AHNAKQ09666 5890 aaKnown RBP5.73□□□□□ -1.49
TDP1-206ENST00000553569 LUZP6Q538Z0 58 aa5.69□□□□□ -1.5
TDP1-206ENST00000553569 LCE1EQ5T753 118 aa5.68□□□□□ -1.5
TDP1-206ENST00000553569 MUC5BQ9HC84 5762 aaPredicted RBP5.66□□□□□ -1.5
TDP1-206ENST00000553569 MUC5ACP98088 5654 aa5.62□□□□□ -1.51
TDP1-206ENST00000553569 H3BS24 57 aa5.57□□□□□ -1.52
TDP1-206ENST00000553569 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
TDP1-206ENST00000553569 LCE1BQ5T7P3 118 aa5.42□□□□□ -1.54
TDP1-206ENST00000553569 LCE1CQ5T751 118 aa5.29□□□□□ -1.56
TDP1-206ENST00000553569 LCE3EQ5T5B0 92 aa5.17□□□□□ -1.58
TDP1-206ENST00000553569 NDUFAF8A1L188 74 aa4.85□□□□□ -1.63
TDP1-206ENST00000553569 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.84□□□□□ -1.63
TDP1-206ENST00000553569 KRTAP5-11Q6L8G4 156 aa4.78□□□□□ -1.64
TDP1-206ENST00000553569 LCE1FQ5T754 118 aa4.54□□□□□ -1.68
TDP1-206ENST00000553569 KRTAP21-2Q3LI59 83 aa4.51□□□□□ -1.69
TDP1-206ENST00000553569 KRTAP4-4Q9BYR3 166 aa4.14□□□□□ -1.75
TDP1-206ENST00000553569 PHGR1C9JFL3 82 aa4.11□□□□□ -1.75
TDP1-206ENST00000553569 PRM1P04553 51 aa4.09□□□□□ -1.75
TDP1-206ENST00000553569 A0A0A0MQY5 61 aa3.94□□□□□ -1.78
TDP1-206ENST00000553569 INE1O15225 51 aa3.89□□□□□ -1.79
TDP1-206ENST00000553569 MUC19Q7Z5P9 8384 aa3.66□□□□□ -1.82
TDP1-206ENST00000553569 KRTAP21-1Q3LI58 79 aa2.97□□□□□ -1.93
TDP1-206ENST00000553569 MUC16Q8WXI7 14507 aa2.67□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 96.1 ms